Reference
Xie Rui, Jia Wen, Andrew Quitadamo, Jianlin Cheng and Xinghua Shi. A MultiLayer Perceptron and Stacked Denoising Auto-encoder Model for Gene Expression Prediction.
The R script corr.R is to calculate the R-square between the estimated expression and the true expression of each gene in the samples for both the MLP-SAE model and the MLP-SAE dropout model. It includes codes for generating figures 4-6 in the main paper.
The data output_true.txt is true expression of each gene, output.txt is the estimate of gene expression under MLP-SAE model and output dropout.txt is the estimate of gene expression under MLP-SAE dropout model.