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Resolves #180 **Why this change was necessary** Travis doesn't offer great support for macOS and is also beginning to charge for macOS build minutes[1]. **What this change does** - Factors the Travis CI build config into a GH Actions Workflow - Adds a matrix build in the GH Actions Workflow for macOS 10.15 Catalina and 11.0 Big Sur (on Apple Silicon), and Ubuntu 18, 20, and 16 - Adds a matrix build in the GH Actions Workflow for Python 3.7 and 3.8 - Adds a build status badge to the README - Adds Coveralls parallel build coverage metrics[2] **Additional context/notes/links** [1] https://blog.travis-ci.com/2020-11-02-travis-ci-new-billing [2] https://coveralls-python.readthedocs.io/en/latest/usage/configuration.html#github-actions-gotcha
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| name: CI-Tests | ||
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| on: | ||
| # Triggers the workflow on push or pull request events but only for the master branch | ||
| push: | ||
| branches: | ||
| - master | ||
| pull_request: | ||
| branches: | ||
| - master | ||
| # Allows you to run this workflow manually from the Actions tab | ||
| workflow_dispatch: | ||
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| jobs: | ||
| test: | ||
| env: | ||
| FSLOUTPUTTYPE: NIFTI_GZ | ||
| runs-on: ${{ matrix.os }} | ||
| strategy: | ||
| matrix: | ||
| os: | ||
| - 'macos-10.15' | ||
| - 'macos-11.0' | ||
| - 'ubuntu-18.04' | ||
| - 'ubuntu-20.04' | ||
| - 'ubuntu-16.04' | ||
| python-version: | ||
| - '3.7' | ||
| - '3.8' | ||
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| steps: | ||
| - uses: actions/checkout@v2 | ||
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| - name: Set XCode version | ||
| if: contains(matrix.os, 'macos-11.0') | ||
| run: sudo xcode-select -s "/Applications/Xcode_12.2.app" | ||
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| - name: Set up Python | ||
| uses: actions/setup-python@v2 | ||
| with: | ||
| python-version: ${{ matrix.python-version }} | ||
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| - name: Package installation | ||
| run: | | ||
| echo "shimming-toolbox installation" | ||
| pip install . | ||
| - name: dcm2niix macOS | ||
| if: contains(matrix.os, 'macos') | ||
| run: brew install dcm2niix | ||
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| - name: dcm2niix Ubuntu | ||
| if: contains(matrix.os, 'ubuntu') | ||
| run: | | ||
| curl -JLO https://github.com/rordenlab/dcm2niix/releases/latest/download/dcm2niix_lnx.zip | ||
| unzip -o dcm2niix_lnx.zip | ||
| sudo install dcm2nii* /usr/bin/ | ||
| - name: prelude macOS | ||
| if: contains(matrix.os, 'macos') | ||
| run: | | ||
| echo "Download prelude for macOS" | ||
| mkdir prelude | ||
| curl -o prelude/prelude -JL https://github.com/shimming-toolbox/binaries/raw/master/prelude_macos | ||
| sudo install prelude/prelude /usr/local/bin | ||
| - name: prelude Ubuntu | ||
| if: contains(matrix.os, 'ubuntu') | ||
| run: | | ||
| echo "Download prelude" | ||
| st_download_data prelude | ||
| sudo install prelude/prelude /usr/local/bin | ||
| - name: Check dependencies | ||
| run: st_check_dependencies | ||
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| - name: Run unit tests | ||
| run: py.test . -v --cov shimmingtoolbox/ --cov-report term-missing | ||
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| - name: macOS Shellcheck | ||
| if: contains(matrix.os, 'macos') | ||
| run: brew install shellcheck | ||
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| - name: Shellcheck | ||
| run: | | ||
| echo "Check Bash scripts" | ||
| if [[ -n "$(ls examples/*.sh)" ]]; then shellcheck examples/*.sh; fi | ||
| - name: Upload Coverage | ||
| run: | | ||
| pip3 install coveralls | ||
| coveralls | ||
| env: | ||
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | ||
| COVERALLS_FLAG_NAME: ${{ matrix.os }}-Python-${{ matrix.python-version }} | ||
| COVERALLS_PARALLEL: true | ||
| coveralls: | ||
| name: Finish Coveralls | ||
| needs: test | ||
| runs-on: 'ubuntu-18.04' | ||
| steps: | ||
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| - name: Set up Python | ||
| uses: actions/setup-python@v2 | ||
| with: | ||
| python-version: '3.7' | ||
| - name: Finished | ||
| run: | | ||
| pip3 install --upgrade coveralls | ||
| coveralls --finish | ||
| env: | ||
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} |
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