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ctk3b committed Jan 23, 2015
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4 changes: 2 additions & 2 deletions README.md
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Expand Up @@ -2,8 +2,8 @@ InterMol: a conversion tool for molecular dynamics simulations
==============================================================

[![PyPI Status](https://badge.fury.io/py/intermol.png)](http://badge.fury.io/py/intermol)
[![Linux Build Status](https://travis-ci.org/ctk3b/intermol.png?branch=develop)](https://travis-ci.org/ctk3b/intermol)
[![Coverage Status](https://coveralls.io/repos/ctk3b/intermol/badge.png?branch=develop)](https://coveralls.io/r/ctk3b/intermol)
[![Linux Build Status](https://travis-ci.org/shirtsgroup/intermol.png?branch=develop)](https://travis-ci.org/shirtsgroup/intermol)
[![Coverage Status](https://coveralls.io/repos/shirtsgroup/intermol/badge.png?branch=develop)](https://coveralls.io/r/shirtsgroup/intermol)
[![Documentation Status](https://readthedocs.org/projects/intermol/badge/?version=develop)](http://intermol.readthedocs.org/en/develop/)

We are currently in alpha testing phase, debugging Desmond<=>Gromacs<=>Lammps conversions.
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2 changes: 1 addition & 1 deletion doc/_build/html/.buildinfo
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@@ -1,4 +1,4 @@
# Sphinx build info version 1
# This file hashes the configuration used when building these files. When it is not found, a full rebuild will be done.
config: db8d4d716e05b4bcad71bd19619f4500
config: 1c3b11e5c6944dcaec21e6f996241bc6
tags: 645f666f9bcd5a90fca523b33c5a78b7
6 changes: 3 additions & 3 deletions doc/_build/html/_modules/index.html
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<meta charset="utf-8">
<meta name="viewport" content="width=device-width, initial-scale=1.0">

<title>Overview: module code &mdash; InterMol 0.2a1 documentation</title>
<title>Overview: module code &mdash; InterMol 0.4.3beta documentation</title>



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<link rel="top" title="InterMol 0.2a1 documentation" href="../index.html"/>
<link rel="top" title="InterMol 0.4.3beta documentation" href="../index.html"/>


<script src="https://cdnjs.cloudflare.com/ajax/libs/modernizr/2.6.2/modernizr.min.js"></script>
Expand Down Expand Up @@ -218,7 +218,7 @@ <h1>All modules for which code is available</h1>
<script type="text/javascript">
var DOCUMENTATION_OPTIONS = {
URL_ROOT:'../',
VERSION:'0.2a1',
VERSION:'0.4.3beta',
COLLAPSE_INDEX:false,
FILE_SUFFIX:'.html',
HAS_SOURCE: true
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6 changes: 3 additions & 3 deletions doc/_build/html/_modules/intermol/atom.html
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<meta charset="utf-8">
<meta name="viewport" content="width=device-width, initial-scale=1.0">

<title>intermol.atom &mdash; InterMol 0.2a1 documentation</title>
<title>intermol.atom &mdash; InterMol 0.4.3beta documentation</title>



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<link rel="top" title="InterMol 0.2a1 documentation" href="../../index.html"/>
<link rel="top" title="InterMol 0.4.3beta documentation" href="../../index.html"/>
<link rel="up" title="Module code" href="../index.html"/>


Expand Down Expand Up @@ -325,7 +325,7 @@ <h1>Source code for intermol.atom</h1><div class="highlight"><pre>
<script type="text/javascript">
var DOCUMENTATION_OPTIONS = {
URL_ROOT:'../../',
VERSION:'0.2a1',
VERSION:'0.4.3beta',
COLLAPSE_INDEX:false,
FILE_SUFFIX:'.html',
HAS_SOURCE: true
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56 changes: 13 additions & 43 deletions doc/_build/html/_modules/intermol/convert.html
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6 changes: 3 additions & 3 deletions doc/_build/html/_modules/intermol/decorators.html
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<meta charset="utf-8">
<meta name="viewport" content="width=device-width, initial-scale=1.0">

<title>intermol.decorators &mdash; InterMol 0.2a1 documentation</title>
<title>intermol.decorators &mdash; InterMol 0.4.3beta documentation</title>



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<link rel="top" title="InterMol 0.2a1 documentation" href="../../index.html"/>
<link rel="top" title="InterMol 0.4.3beta documentation" href="../../index.html"/>
<link rel="up" title="Module code" href="../index.html"/>


Expand Down Expand Up @@ -256,7 +256,7 @@ <h1>Source code for intermol.decorators</h1><div class="highlight"><pre>
<script type="text/javascript">
var DOCUMENTATION_OPTIONS = {
URL_ROOT:'../../',
VERSION:'0.2a1',
VERSION:'0.4.3beta',
COLLAPSE_INDEX:false,
FILE_SUFFIX:'.html',
HAS_SOURCE: true
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6 changes: 3 additions & 3 deletions doc/_build/html/_modules/intermol/forces/abstract_2_virtual_type.html
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<meta charset="utf-8">
<meta name="viewport" content="width=device-width, initial-scale=1.0">

<title>intermol.forces.abstract_2_virtual_type &mdash; InterMol 0.2a1 documentation</title>
<title>intermol.forces.abstract_2_virtual_type &mdash; InterMol 0.4.3beta documentation</title>



Expand All @@ -28,7 +28,7 @@



<link rel="top" title="InterMol 0.2a1 documentation" href="../../../index.html"/>
<link rel="top" title="InterMol 0.4.3beta documentation" href="../../../index.html"/>
<link rel="up" title="Module code" href="../../index.html"/>


Expand Down Expand Up @@ -164,7 +164,7 @@ <h1>Source code for intermol.forces.abstract_2_virtual_type</h1><div class="high
<script type="text/javascript">
var DOCUMENTATION_OPTIONS = {
URL_ROOT:'../../../',
VERSION:'0.2a1',
VERSION:'0.4.3beta',
COLLAPSE_INDEX:false,
FILE_SUFFIX:'.html',
HAS_SOURCE: true
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6 changes: 3 additions & 3 deletions doc/_build/html/_modules/intermol/forces/abstract_3_virtual_type.html
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<meta charset="utf-8">
<meta name="viewport" content="width=device-width, initial-scale=1.0">

<title>intermol.forces.abstract_3_virtual_type &mdash; InterMol 0.2a1 documentation</title>
<title>intermol.forces.abstract_3_virtual_type &mdash; InterMol 0.4.3beta documentation</title>



Expand All @@ -28,7 +28,7 @@



<link rel="top" title="InterMol 0.2a1 documentation" href="../../../index.html"/>
<link rel="top" title="InterMol 0.4.3beta documentation" href="../../../index.html"/>
<link rel="up" title="Module code" href="../../index.html"/>


Expand Down Expand Up @@ -166,7 +166,7 @@ <h1>Source code for intermol.forces.abstract_3_virtual_type</h1><div class="high
<script type="text/javascript">
var DOCUMENTATION_OPTIONS = {
URL_ROOT:'../../../',
VERSION:'0.2a1',
VERSION:'0.4.3beta',
COLLAPSE_INDEX:false,
FILE_SUFFIX:'.html',
HAS_SOURCE: true
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6 changes: 3 additions & 3 deletions doc/_build/html/_modules/intermol/forces/abstract_4_virtual_type.html
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<meta charset="utf-8">
<meta name="viewport" content="width=device-width, initial-scale=1.0">

<title>intermol.forces.abstract_4_virtual_type &mdash; InterMol 0.2a1 documentation</title>
<title>intermol.forces.abstract_4_virtual_type &mdash; InterMol 0.4.3beta documentation</title>



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<link rel="top" title="InterMol 0.2a1 documentation" href="../../../index.html"/>
<link rel="top" title="InterMol 0.4.3beta documentation" href="../../../index.html"/>
<link rel="up" title="Module code" href="../../index.html"/>


Expand Down Expand Up @@ -168,7 +168,7 @@ <h1>Source code for intermol.forces.abstract_4_virtual_type</h1><div class="high
<script type="text/javascript">
var DOCUMENTATION_OPTIONS = {
URL_ROOT:'../../../',
VERSION:'0.2a1',
VERSION:'0.4.3beta',
COLLAPSE_INDEX:false,
FILE_SUFFIX:'.html',
HAS_SOURCE: true
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6 changes: 3 additions & 3 deletions doc/_build/html/_modules/intermol/forces/abstract_angle_type.html
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<meta charset="utf-8">
<meta name="viewport" content="width=device-width, initial-scale=1.0">

<title>intermol.forces.abstract_angle_type &mdash; InterMol 0.2a1 documentation</title>
<title>intermol.forces.abstract_angle_type &mdash; InterMol 0.4.3beta documentation</title>



Expand All @@ -28,7 +28,7 @@



<link rel="top" title="InterMol 0.2a1 documentation" href="../../../index.html"/>
<link rel="top" title="InterMol 0.4.3beta documentation" href="../../../index.html"/>
<link rel="up" title="Module code" href="../../index.html"/>


Expand Down Expand Up @@ -166,7 +166,7 @@ <h1>Source code for intermol.forces.abstract_angle_type</h1><div class="highligh
<script type="text/javascript">
var DOCUMENTATION_OPTIONS = {
URL_ROOT:'../../../',
VERSION:'0.2a1',
VERSION:'0.4.3beta',
COLLAPSE_INDEX:false,
FILE_SUFFIX:'.html',
HAS_SOURCE: true
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6 changes: 3 additions & 3 deletions doc/_build/html/_modules/intermol/forces/abstract_atom_type.html
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<meta charset="utf-8">
<meta name="viewport" content="width=device-width, initial-scale=1.0">

<title>intermol.forces.abstract_atom_type &mdash; InterMol 0.2a1 documentation</title>
<title>intermol.forces.abstract_atom_type &mdash; InterMol 0.4.3beta documentation</title>



Expand All @@ -28,7 +28,7 @@



<link rel="top" title="InterMol 0.2a1 documentation" href="../../../index.html"/>
<link rel="top" title="InterMol 0.4.3beta documentation" href="../../../index.html"/>
<link rel="up" title="Module code" href="../../index.html"/>


Expand Down Expand Up @@ -178,7 +178,7 @@ <h1>Source code for intermol.forces.abstract_atom_type</h1><div class="highlight
<script type="text/javascript">
var DOCUMENTATION_OPTIONS = {
URL_ROOT:'../../../',
VERSION:'0.2a1',
VERSION:'0.4.3beta',
COLLAPSE_INDEX:false,
FILE_SUFFIX:'.html',
HAS_SOURCE: true
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6 changes: 3 additions & 3 deletions doc/_build/html/_modules/intermol/forces/abstract_bond_type.html
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Expand Up @@ -7,7 +7,7 @@
<meta charset="utf-8">
<meta name="viewport" content="width=device-width, initial-scale=1.0">

<title>intermol.forces.abstract_bond_type &mdash; InterMol 0.2a1 documentation</title>
<title>intermol.forces.abstract_bond_type &mdash; InterMol 0.4.3beta documentation</title>



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<link rel="top" title="InterMol 0.2a1 documentation" href="../../../index.html"/>
<link rel="top" title="InterMol 0.4.3beta documentation" href="../../../index.html"/>
<link rel="up" title="Module code" href="../../index.html"/>


Expand Down Expand Up @@ -165,7 +165,7 @@ <h1>Source code for intermol.forces.abstract_bond_type</h1><div class="highlight
<script type="text/javascript">
var DOCUMENTATION_OPTIONS = {
URL_ROOT:'../../../',
VERSION:'0.2a1',
VERSION:'0.4.3beta',
COLLAPSE_INDEX:false,
FILE_SUFFIX:'.html',
HAS_SOURCE: true
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6 changes: 3 additions & 3 deletions doc/_build/html/_modules/intermol/forces/abstract_dihedral_type.html
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<meta charset="utf-8">
<meta name="viewport" content="width=device-width, initial-scale=1.0">

<title>intermol.forces.abstract_dihedral_type &mdash; InterMol 0.2a1 documentation</title>
<title>intermol.forces.abstract_dihedral_type &mdash; InterMol 0.4.3beta documentation</title>



Expand All @@ -28,7 +28,7 @@



<link rel="top" title="InterMol 0.2a1 documentation" href="../../../index.html"/>
<link rel="top" title="InterMol 0.4.3beta documentation" href="../../../index.html"/>
<link rel="up" title="Module code" href="../../index.html"/>


Expand Down Expand Up @@ -168,7 +168,7 @@ <h1>Source code for intermol.forces.abstract_dihedral_type</h1><div class="highl
<script type="text/javascript">
var DOCUMENTATION_OPTIONS = {
URL_ROOT:'../../../',
VERSION:'0.2a1',
VERSION:'0.4.3beta',
COLLAPSE_INDEX:false,
FILE_SUFFIX:'.html',
HAS_SOURCE: true
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6 changes: 3 additions & 3 deletions doc/_build/html/_modules/intermol/forces/abstract_nonbonded_type.html
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<meta charset="utf-8">
<meta name="viewport" content="width=device-width, initial-scale=1.0">

<title>intermol.forces.abstract_nonbonded_type &mdash; InterMol 0.2a1 documentation</title>
<title>intermol.forces.abstract_nonbonded_type &mdash; InterMol 0.4.3beta documentation</title>



Expand All @@ -28,7 +28,7 @@



<link rel="top" title="InterMol 0.2a1 documentation" href="../../../index.html"/>
<link rel="top" title="InterMol 0.4.3beta documentation" href="../../../index.html"/>
<link rel="up" title="Module code" href="../../index.html"/>


Expand Down Expand Up @@ -165,7 +165,7 @@ <h1>Source code for intermol.forces.abstract_nonbonded_type</h1><div class="high
<script type="text/javascript">
var DOCUMENTATION_OPTIONS = {
URL_ROOT:'../../../',
VERSION:'0.2a1',
VERSION:'0.4.3beta',
COLLAPSE_INDEX:false,
FILE_SUFFIX:'.html',
HAS_SOURCE: true
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6 changes: 3 additions & 3 deletions doc/_build/html/_modules/intermol/forces/abstract_pair_type.html
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<meta charset="utf-8">
<meta name="viewport" content="width=device-width, initial-scale=1.0">

<title>intermol.forces.abstract_pair_type &mdash; InterMol 0.2a1 documentation</title>
<title>intermol.forces.abstract_pair_type &mdash; InterMol 0.4.3beta documentation</title>



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<link rel="top" title="InterMol 0.2a1 documentation" href="../../../index.html"/>
<link rel="top" title="InterMol 0.4.3beta documentation" href="../../../index.html"/>
<link rel="up" title="Module code" href="../../index.html"/>


Expand Down Expand Up @@ -167,7 +167,7 @@ <h1>Source code for intermol.forces.abstract_pair_type</h1><div class="highlight
<script type="text/javascript">
var DOCUMENTATION_OPTIONS = {
URL_ROOT:'../../../',
VERSION:'0.2a1',
VERSION:'0.4.3beta',
COLLAPSE_INDEX:false,
FILE_SUFFIX:'.html',
HAS_SOURCE: true
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6 changes: 3 additions & 3 deletions doc/_build/html/_modules/intermol/forces/abstract_type.html
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<meta charset="utf-8">
<meta name="viewport" content="width=device-width, initial-scale=1.0">

<title>intermol.forces.abstract_type &mdash; InterMol 0.2a1 documentation</title>
<title>intermol.forces.abstract_type &mdash; InterMol 0.4.3beta documentation</title>



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<link rel="top" title="InterMol 0.2a1 documentation" href="../../../index.html"/>
<link rel="top" title="InterMol 0.4.3beta documentation" href="../../../index.html"/>
<link rel="up" title="Module code" href="../../index.html"/>


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<script type="text/javascript">
var DOCUMENTATION_OPTIONS = {
URL_ROOT:'../../../',
VERSION:'0.2a1',
VERSION:'0.4.3beta',
COLLAPSE_INDEX:false,
FILE_SUFFIX:'.html',
HAS_SOURCE: true
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6 changes: 3 additions & 3 deletions doc/_build/html/_modules/intermol/forces/atom_c_type.html
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<meta charset="utf-8">
<meta name="viewport" content="width=device-width, initial-scale=1.0">

<title>intermol.forces.atom_c_type &mdash; InterMol 0.2a1 documentation</title>
<title>intermol.forces.atom_c_type &mdash; InterMol 0.4.3beta documentation</title>



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<link rel="top" title="InterMol 0.2a1 documentation" href="../../../index.html"/>
<link rel="top" title="InterMol 0.4.3beta documentation" href="../../../index.html"/>
<link rel="up" title="Module code" href="../../index.html"/>


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<script type="text/javascript">
var DOCUMENTATION_OPTIONS = {
URL_ROOT:'../../../',
VERSION:'0.2a1',
VERSION:'0.4.3beta',
COLLAPSE_INDEX:false,
FILE_SUFFIX:'.html',
HAS_SOURCE: true
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