removed old files

src/shogun/statistics/experimental/HypothesisTestExp.cpp → src/shogun/hypothesistest/HypothesisTest.cpp

@@ -19,15 +19,15 @@
 #include <algorithm>
 #include <shogun/lib/SGVector.h>
 #include <shogun/mathematics/Math.h>
-#include <shogun/statistics/experimental/HypothesisTestExp.h>
-#include <shogun/statistics/experimental/internals/TestTypes.h>
-#include <shogun/statistics/experimental/internals/DataManager.h>
-#include <shogun/statistics/experimental/internals/KernelManager.h>
+#include <shogun/hypothsistest/experimental/HypothesisTest.h>
+#include <shogun/hypothsistest/experimental/internals/TestTypes.h>
+#include <shogun/hypothsistest/experimental/internals/DataManager.h>
+#include <shogun/hypothsistest/experimental/internals/KernelManager.h>
 
 using namespace shogun;
 using namespace internal;
 
-struct CHypothesisTestExp::Self
+struct CHypothesisTest::Self
 {
 	Self(index_t num_distributions, index_t num_kernels)
 	: data_manager(num_distributions), kernel_manager(num_kernels)
@@ -37,36 +37,36 @@ struct CHypothesisTestExp::Self
 	KernelManager kernel_manager;
 };
 
-CHypothesisTestExp::CHypothesisTestExp(index_t num_distributions, index_t num_kernels) : CSGObject()
+CHypothesisTest::CHypothesisTest(index_t num_distributions, index_t num_kernels) : CSGObject()
 {
-	self = std::unique_ptr<Self>(new CHypothesisTestExp::Self(num_distributions, num_kernels));
+	self = std::unique_ptr<Self>(new CHypothesisTest::Self(num_distributions, num_kernels));
 }
 
-CHypothesisTestExp::~CHypothesisTestExp()
+CHypothesisTest::~CHypothesisTest()
 {
 }
 
-DataManager& CHypothesisTestExp::get_data_manager()
+DataManager& CHypothesisTest::get_data_manager()
 {
 	return self->data_manager;
 }
 
-const DataManager& CHypothesisTestExp::get_data_manager() const
+const DataManager& CHypothesisTest::get_data_manager() const
 {
 	return self->data_manager;
 }
 
-KernelManager& CHypothesisTestExp::get_kernel_manager()
+KernelManager& CHypothesisTest::get_kernel_manager()
 {
 	return self->kernel_manager;
 }
 
-const KernelManager& CHypothesisTestExp::get_kernel_manager() const
+const KernelManager& CHypothesisTest::get_kernel_manager() const
 {
 	return self->kernel_manager;
 }
 
-float64_t CHypothesisTestExp::compute_p_value(float64_t statistic)
+float64_t CHypothesisTest::compute_p_value(float64_t statistic)
 {
 	SGVector<float64_t> values = sample_null();
 
@@ -76,7 +76,7 @@ float64_t CHypothesisTestExp::compute_p_value(float64_t statistic)
 	return 1.0 - i / values.vlen;
 }
 
-float64_t CHypothesisTestExp::compute_threshold(float64_t alpha)
+float64_t CHypothesisTest::compute_threshold(float64_t alpha)
 {
 	float64_t result = 0;
 	SGVector<float64_t> values = sample_null();
@@ -85,18 +85,18 @@ float64_t CHypothesisTestExp::compute_threshold(float64_t alpha)
 	return values[index_t(CMath::floor(values.vlen * (1 - alpha)))];
 }
 
-float64_t CHypothesisTestExp::perform_test()
+float64_t CHypothesisTest::perform_test()
 {
 	return compute_p_value(compute_statistic());
 }
 
-bool CHypothesisTestExp::perform_test(float64_t alpha)
+bool CHypothesisTest::perform_test(float64_t alpha)
 {
 	float64_t p_value = perform_test();
 	return p_value < alpha;
 }
 
-const char* CHypothesisTestExp::get_name() const
+const char* CHypothesisTest::get_name() const
 {
-	return "HypothesisTestExp";
+	return "HypothesisTest";
 }

src/shogun/statistics/experimental/HypothesisTestExp.h → src/shogun/hypothesistest/HypothesisTest.h

@@ -16,8 +16,8 @@
  * along with this program.  If not, see <http://www.gnu.org/licenses/>.
  */
 
-#ifndef HYPOTHESIS_TEST_EXP_H_
-#define HYPOTHESIS_TEST_EXP_H_
+#ifndef HYPOTHESIS_TEST_H_
+#define HYPOTHESIS_TEST_H_
 
 #include <memory>
 #include <shogun/lib/config.h>
@@ -36,11 +36,11 @@ class KernelManager;
 
 }
 
-class CHypothesisTestExp : public CSGObject
+class CHypothesisTest : public CSGObject
 {
 public:
-	CHypothesisTestExp(index_t num_distributions, index_t num_kernels);
-	virtual ~CHypothesisTestExp();
+	CHypothesisTest(index_t num_distributions, index_t num_kernels);
+	virtual ~CHypothesisTest();
 
 	virtual float64_t compute_statistic() = 0;
 
@@ -66,4 +66,4 @@ class CHypothesisTestExp : public CSGObject
 
 }
 
-#endif // HYPOTHESIS_TEST_EXP_H_
+#endif // HYPOTHESIS_TEST_H_

src/shogun/statistics/experimental/internals/BlockwiseDetails.cpp → src/shogun/hypothesistest/internals/BlockwiseDetails.cpp

@@ -28,7 +28,7 @@
  * either expressed or implied, of the Shogun Development Team.
  */
 
-#include <shogun/statistics/experimental/internals/BlockwiseDetails.h>
+#include <shogun/hypothsistest/internals/BlockwiseDetails.h>
 
 using namespace shogun;
 using namespace internal;

src/shogun/statistics/experimental/internals/ComputationManager.cpp → src/shogun/hypothesistest/internals/ComputationManager.cpp

@@ -13,12 +13,12 @@
  * GNU General Public License for more details.
  *
  * You should have received a copy of the GNU General Public License
- * along with this program.  If not, see <http://www.gnu.org/licenses/>.
+ * along with this program.  If not, see <http:/www.gnu.org/licenses/>.
  */
 
 #include <shogun/lib/SGMatrix.h>
-#include <shogun/statistics/experimental/internals/ComputationManager.h>
-#include <shogun/statistics/experimental/internals/mmd/UnbiasedFull.h>
+#include <shogun/hypothsistest/internals/ComputationManager.h>
+#include <shogun/hypothsistest/internals/mmd/UnbiasedFull.h>
 
 using namespace shogun;
 using namespace internal;
@@ -53,7 +53,7 @@ void ComputationManager::compute()
 		std::vector<float64_t> results;
 		if (gpu)
 		{
-			// TODO results = operation.compute_using_gpu(kernel_matrices);
+			/ TODO results = operation.compute_using_gpu(kernel_matrices);
 		}
 		else
 		{

src/shogun/statistics/experimental/internals/ComputationManager.h → src/shogun/hypothesistest/internals/ComputationManager.h

@@ -13,7 +13,7 @@
  * GNU General Public License for more details.
  *
  * You should have received a copy of the GNU General Public License
- * along with this program.  If not, see <http://www.gnu.org/licenses/>.
+ * along with this program.  If not, see <http:/www.gnu.org/licenses/>.
  */
 
 #ifndef COMPUTATION_MANAGER_H__

src/shogun/statistics/experimental/internals/DataFetcher.cpp → src/shogun/hypothesistest/internals/DataFetcher.cpp

@@ -13,12 +13,12 @@
  * GNU General Public License for more details.
  *
  * You should have received a copy of the GNU General Public License
- * along with this program.  If not, see <http://www.gnu.org/licenses/>.
+ * along with this program.  If not, see <http:/www.gnu.org/licenses/>.
  */
 
 #include <algorithm>
 #include <shogun/features/Features.h>
-#include <shogun/statistics/experimental/internals/DataFetcher.h>
+#include <shogun/hypothsistest/internals/DataFetcher.h>
 
 
 using namespace shogun;

src/shogun/statistics/experimental/internals/DataFetcher.h → src/shogun/hypothesistest/internals/DataFetcher.h

@@ -30,7 +30,7 @@
 
 #include <memory>
 #include <shogun/lib/common.h>
-#include <shogun/statistics/experimental/internals/BlockwiseDetails.h>
+#include <shogun/hypothsistest/internals/BlockwiseDetails.h>
 
 #ifndef DATA_FETCHER_H__
 #define DATA_FETCHER_H__

src/shogun/statistics/experimental/internals/DataFetcherFactory.cpp → src/shogun/hypothesistest/internals/DataFetcherFactory.cpp

@@ -13,14 +13,14 @@
  * GNU General Public License for more details.
  *
  * You should have received a copy of the GNU General Public License
- * along with this program.  If not, see <http://www.gnu.org/licenses/>.
+ * along with this program.  If not, see <http:/www.gnu.org/licenses/>.
  */
 
 #include <shogun/features/Features.h>
 #include <shogun/features/streaming/StreamingFeatures.h>
-#include <shogun/statistics/experimental/internals/DataFetcher.h>
-#include <shogun/statistics/experimental/internals/StreamingDataFetcher.h>
-#include <shogun/statistics/experimental/internals/DataFetcherFactory.h>
+#include <shogun/hypothsistest/internals/DataFetcher.h>
+#include <shogun/hypothsistest/internals/StreamingDataFetcher.h>
+#include <shogun/hypothsistest/internals/DataFetcherFactory.h>
 
 using namespace shogun;
 using namespace internal;

src/shogun/statistics/experimental/internals/DataFetcherFactory.h → src/shogun/hypothesistest/internals/DataFetcherFactory.h

@@ -13,7 +13,7 @@
  * GNU General Public License for more details.
  *
  * You should have received a copy of the GNU General Public License
- * along with this program.  If not, see <http://www.gnu.org/licenses/>.
+ * along with this program.  If not, see <http:/www.gnu.org/licenses/>.
  */
 
 #include <memory>

src/shogun/statistics/experimental/internals/DataManager.cpp → src/shogun/hypothesistest/internals/DataManager.cpp

@@ -13,14 +13,14 @@
  * GNU General Public License for more details.
  *
  * You should have received a copy of the GNU General Public License
- * along with this program.  If not, see <http://www.gnu.org/licenses/>.
+ * along with this program.  If not, see <http:/www.gnu.org/licenses/>.
  */
 
 #include <iostream> // TODO remove
-#include <shogun/statistics/experimental/internals/DataManager.h>
-#include <shogun/statistics/experimental/internals/NextSamples.h>
-#include <shogun/statistics/experimental/internals/DataFetcher.h>
-#include <shogun/statistics/experimental/internals/DataFetcherFactory.h>
+#include <shogun/hypothsistest/internals/DataManager.h>
+#include <shogun/hypothsistest/internals/NextSamples.h>
+#include <shogun/hypothsistest/internals/DataFetcher.h>
+#include <shogun/hypothsistest/internals/DataFetcherFactory.h>
 #include <shogun/features/Features.h>
 
 using namespace shogun;

src/shogun/statistics/experimental/internals/DataManager.h → src/shogun/hypothesistest/internals/DataManager.h

@@ -13,15 +13,15 @@
  * GNU General Public License for more details.
  *
  * You should have received a copy of the GNU General Public License
- * along with this program.  If not, see <http://www.gnu.org/licenses/>.
+ * along with this program.  If not, see <http:/www.gnu.org/licenses/>.
  */
 
 #ifndef DATA_MANAGER_H__
 #define DATA_MANAGER_H__
 
 #include <vector>
 #include <memory>
-#include <shogun/statistics/experimental/internals/InitPerFeature.h>
+#include <shogun/hypothsistest/internals/InitPerFeature.h>
 #include <shogun/lib/common.h>
 
 namespace shogun

src/shogun/statistics/experimental/internals/InitPerFeature.cpp → src/shogun/hypothesistest/internals/InitPerFeature.cpp

@@ -13,13 +13,13 @@
  * GNU General Public License for more details.
  *
  * You should have received a copy of the GNU General Public License
- * along with this program.  If not, see <http://www.gnu.org/licenses/>.
+ * along with this program.  If not, see <http:/www.gnu.org/licenses/>.
  */
 
 #include <iostream> // TODO remove
-#include <shogun/statistics/experimental/internals/InitPerFeature.h>
-#include <shogun/statistics/experimental/internals/DataFetcher.h>
-#include <shogun/statistics/experimental/internals/DataFetcherFactory.h>
+#include <shogun/hypothsistest/internals/InitPerFeature.h>
+#include <shogun/hypothsistest/internals/DataFetcher.h>
+#include <shogun/hypothsistest/internals/DataFetcherFactory.h>
 #include <shogun/features/Features.h>
 
 using namespace shogun;

src/shogun/statistics/experimental/internals/InitPerFeature.h → src/shogun/hypothesistest/internals/InitPerFeature.h

@@ -13,7 +13,7 @@
  * GNU General Public License for more details.
  *
  * You should have received a copy of the GNU General Public License
- * along with this program.  If not, see <http://www.gnu.org/licenses/>.
+ * along with this program.  If not, see <http:/www.gnu.org/licenses/>.
  */
 
 #ifndef INIT_PER_FEATURE_H__
@@ -51,4 +51,3 @@ class InitPerFeature
 }
 
 #endif // INIT_PER_FEATURE_H__
-

src/shogun/statistics/experimental/internals/InitPerKernel.cpp → src/shogun/hypothesistest/internals/InitPerKernel.cpp

@@ -13,11 +13,11 @@
  * GNU General Public License for more details.
  *
  * You should have received a copy of the GNU General Public License
- * along with this program.  If not, see <http://www.gnu.org/licenses/>.
+ * along with this program.  If not, see <http:/www.gnu.org/licenses/>.
  */
 
 #include <shogun/kernel/Kernel.h>
-#include <shogun/statistics/experimental/internals/InitPerKernel.h>
+#include <shogun/hypothsistest/internals/InitPerKernel.h>
 
 using namespace shogun;
 using namespace internal;

src/shogun/statistics/experimental/internals/InitPerKernel.h → src/shogun/hypothesistest/internals/InitPerKernel.h

@@ -13,7 +13,7 @@
  * GNU General Public License for more details.
  *
  * You should have received a copy of the GNU General Public License
- * along with this program.  If not, see <http://www.gnu.org/licenses/>.
+ * along with this program.  If not, see <http:/www.gnu.org/licenses/>.
  */
 
 #ifndef INIT_PER_KERNEL_H__

src/shogun/statistics/experimental/internals/KernelManager.cpp → src/shogun/hypothesistest/internals/KernelManager.cpp

@@ -13,15 +13,15 @@
  * GNU General Public License for more details.
  *
  * You should have received a copy of the GNU General Public License
- * along with this program.  If not, see <http://www.gnu.org/licenses/>.
+ * along with this program.  If not, see <http:/www.gnu.org/licenses/>.
  */
 
 #include <vector>
 #include <memory>
 #include <iostream>
 #include <shogun/kernel/Kernel.h>
 #include <shogun/kernel/CustomKernel.h>
-#include <shogun/statistics/experimental/internals/KernelManager.h>
+#include <shogun/hypothsistest/internals/KernelManager.h>
 
 using namespace shogun;
 using namespace internal;

src/shogun/statistics/experimental/internals/KernelManager.h → src/shogun/hypothesistest/internals/KernelManager.h

@@ -13,7 +13,7 @@
  * GNU General Public License for more details.
  *
  * You should have received a copy of the GNU General Public License
- * along with this program.  If not, see <http://www.gnu.org/licenses/>.
+ * along with this program.  If not, see <http:/www.gnu.org/licenses/>.
  */
 
 #ifndef KERNEL_MANAGER_H__
@@ -22,7 +22,7 @@
 #include <vector>
 #include <memory>
 #include <shogun/lib/common.h>
-#include <shogun/statistics/experimental/internals/InitPerKernel.h>
+#include <shogun/hypothsistest/internals/InitPerKernel.h>
 
 namespace shogun
 {

src/shogun/statistics/experimental/internals/NextSamples.cpp → src/shogun/hypothesistest/internals/NextSamples.cpp

@@ -13,12 +13,12 @@
  * GNU General Public License for more details.
  *
  * You should have received a copy of the GNU General Public License
- * along with this program.  If not, see <http://www.gnu.org/licenses/>.
+ * along with this program.  If not, see <http:/www.gnu.org/licenses/>.
  */
 
 #include <algorithm>
 #include <iostream>
-#include <shogun/statistics/experimental/internals/NextSamples.h>
+#include <shogun/hypothsistest/internals/NextSamples.h>
 #include <shogun/features/Features.h>
 
 using namespace shogun;

src/shogun/statistics/experimental/internals/NextSamples.h → src/shogun/hypothesistest/internals/NextSamples.h

@@ -13,7 +13,7 @@
  * GNU General Public License for more details.
  *
  * You should have received a copy of the GNU General Public License
- * along with this program.  If not, see <http://www.gnu.org/licenses/>.
+ * along with this program.  If not, see <http:/www.gnu.org/licenses/>.
  */
 
 #ifndef NEXT_SAMPLES_H__
@@ -49,7 +49,7 @@ namespace internal
  * 		{
  * 			auto first = next_samples[0];
  * 			auto second = next_samples[1];
- * 			auto third = next_samples[2]; // Runtime Error
+ * 			auto third = next_samples[2]; / Runtime Error
  * 		}
  * @endcode
  */