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Multi-layer Born scattering model for 3D phase contrast optical diffraction tomography

Please cite the following paper when using the code:

Multi-layer Born multiple-scattering model for 3D phase microscopy

Michael Chen, David Ren, Hsiou-Yuan Liu, Shwetadwip Chowdhury, and Laura Waller

Contents

  1. Usage
  2. Data
  3. Resources
  4. Updates

Usage

  1. Install required dependencies Arrayfire and contexttimer.
  2. Clone this repo: git clone https://github.berkeley.edu/Waller-Lab/multi-layer-born.git
  3. Run sample script for simulated measurements and reconstructions.

Data

Sample data is prepared here.

Resources

  1. MATLAB implementation of the multi-slice method.

Updates

08/27/2020:

  1. Added first version of code to repo. Same as that used in the paper.