Bump version: 1.3.0 → 1.4.0

sigven · Mar 8, 2023 · 65d8da7 · 65d8da7
1 parent f94e93c
commit 65d8da7
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Showing 10 changed files with 12 additions and 12 deletions.
diff --git a/.bumpversion.cfg b/.bumpversion.cfg
@@ -1,5 +1,5 @@
 [bumpversion]
-current_version = 1.3.0
+current_version = 1.4.0
 commit = True
 tag = False
 

diff --git a/.github/workflows/build_conda_recipes.yaml b/.github/workflows/build_conda_recipes.yaml
@@ -10,7 +10,7 @@ env:
   recipe_path: conda/recipe
   env_yml_path: conda/env/yml
   env_lock_path: conda/env/lock
-  VERSION: '1.3.0' # versioned by bump2version
+  VERSION: '1.4.0' # versioned by bump2version
 jobs:
   build_conda_pkgs:
     # When merging to one of the branches above and the commit message matches

diff --git a/conda/env/yml/pcgr.yml b/conda/env/yml/pcgr.yml
@@ -7,7 +7,7 @@ channels:
   - defaults
 
 dependencies:
-  - pcgr ==1.3.0 # versioned by bump2version
+  - pcgr ==1.4.0 # versioned by bump2version
   - bedtools ==2.30.0
   - bcftools ==1.10.2
   - cyvcf2 ==0.30.11

diff --git a/conda/env/yml/pcgrr.yml b/conda/env/yml/pcgrr.yml
@@ -8,7 +8,7 @@ channels:
 
 dependencies:
   - python
-  - r-pcgrr ==1.3.0 # versioned by bump2version
+  - r-pcgrr ==1.4.0 # versioned by bump2version
   - r-cpsr
   - r-argparse
   - bioconductor-bsgenome.hsapiens.ucsc.hg38

diff --git a/conda/env/yml/pkgdown.yml b/conda/env/yml/pkgdown.yml
@@ -1,6 +1,6 @@
 name: pkgdown
 dependencies:
-  - r-pcgrr ==1.3.0 # versioned by bump2version
+  - r-pcgrr ==1.4.0 # versioned by bump2version
   - r-cpsr
   - r-pkgdown
   - r-readr

diff --git a/conda/recipe/pcgrr/meta.yaml b/conda/recipe/pcgrr/meta.yaml
@@ -1,6 +1,6 @@
 package:
   name: r-pcgrr
-  version: 1.3.0 # versioned by bump2version
+  version: 1.4.0 # versioned by bump2version
 
 source:
   path: ../../../pcgrr

diff --git a/pcgr/_version.py b/pcgr/_version.py
@@ -1,2 +1,2 @@
 # versioned by bump2version
-__version__ = '1.3.0'
+__version__ = '1.4.0'
diff --git a/pcgrr/DESCRIPTION b/pcgrr/DESCRIPTION
@@ -1,7 +1,7 @@
 Package: pcgrr
 Type: Package
 Title: Personal Cancer Genome ReporteR
-Version: 1.3.0
+Version: 1.4.0
 Date: 2022-03-30
 Authors@R:
     c(person(given = "Sigve",

diff --git a/pcgrr/vignettes/installation.Rmd b/pcgrr/vignettes/installation.Rmd
@@ -12,7 +12,7 @@ output: rmarkdown::html_document
   software requirements:
 
 ```bash
-PCGR_VERSION="1.3.0"
+PCGR_VERSION="1.4.0"
 PCGR_REPO="https://raw.githubusercontent.com/sigven/pcgr/v${PCGR_VERSION}/conda/env/lock/"
 PLATFORM="linux" # or "osx"
 
@@ -79,7 +79,7 @@ Download and unpack the latest software release from <https://github.com/sigven/
 Alternatively if you have `git` installed, you can do:
 
 ```bash
-PCGR_VERSION="1.3.0"
+PCGR_VERSION="1.4.0"
 OUTPUT_DIRECTORY="PCGR"
 
 git clone \
@@ -235,7 +235,7 @@ docker container run -it --rm \
     -v /Users/you/dir1/data:/root/pcgr_data \
     -v /Users/you/dir2/pcgr_inputs:/root/pcgr_inputs \
     -v /Users/you/dir3/pcgr_outputs:/root/pcgr_outputs \
-    sigven/pcgr:1.3.0 \
+    sigven/pcgr:1.4.0 \
     pcgr \
       --input_vcf "/root/pcgr_inputs/tumor_sample.BRCA.vcf.gz" \
       --pcgr_dir "/root/pcgr_data" \

diff --git a/setup.py b/setup.py
@@ -2,7 +2,7 @@
 
 setuptools.setup(
     name='pcgr',
-    version='1.3.0', # versioned by bump2version
+    version='1.4.0', # versioned by bump2version
     license='MIT',
     author='Sigve Nakken',
     author_email='sigven@gmail.com',