OTP 2024.06

sigven · Jun 21, 2024 · 77f0f3b · 77f0f3b
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Showing 7 changed files with 11 additions and 5 deletions.
diff --git a/NEWS.md b/NEWS.md
@@ -1,7 +1,8 @@
 # Version 1.6.10 
 
 * Fixed some erroneous drug classifications
-* CIViC update (20240618)
+* CIViC update (20240621)
+* OTP update (2024.06)
 
 # Version 1.6.8 (June 7th 2024)
 

diff --git a/R/sysdata.rda b/R/sysdata.rda
diff --git a/data-raw/drug_name_black_list.txt b/data-raw/drug_name_black_list.txt
@@ -5,6 +5,8 @@ Tesmilifene Hydrochloride
 8H9 131I
 ABC-294640
 AXL-1717
+AZD-7451
+TAS-115
 Lenperone Hydrochloride
 ABT-126
 AZD-3759

diff --git a/data-raw/drug_utilities.R b/data-raw/drug_utilities.R
@@ -2685,6 +2685,11 @@ assign_drug_category <- function(drug_df = NULL,
         stringr::str_detect(
           atc_code_level3, "(\\|L01XX[A-J])|(^L01XX[A-J])"
         ) ~ "cancer_targeted_therapy",
+      !is.na(target_symbol) &
+        !is.na(atc_code_level3) &
+        stringr::str_detect(
+          atc_code_level3, "(\\|L01XXM)|(^L01XXM)"
+        ) ~ "cancer_targeted_therapy",
       !is.na(target_symbol) &
         !is.na(atc_code_level3) &
         stringr::str_detect(

diff --git a/data-raw/metadata_pharm_oncox.xlsx b/data-raw/metadata_pharm_oncox.xlsx
diff --git a/inst/CITATION b/inst/CITATION
@@ -5,10 +5,10 @@ citEntry(
   title    = "pharmOncoX: Targeted and non-targeted anti-cancer drugs and drug regimens",
   author   = "Sigve Nakken",
   year     = "2024",
-  note     = "R package version 1.6.10",
+  note     = "R package version 1.6.9",
   url      = "https://github.com/sigven/pharmOncoX",
   textVersion = paste("Nakken S. ","(2024)",
   " pharmOncoX: Targeted and non-targeted anti-cancer drugs and drug regimens.",
-  " R package version 1.6.10.",
+  " R package version 1.6.9.",
   " (https://github.com/sigven/pharmOncoX)")
 )
diff --git a/vignettes/pharmOncoX.Rmd b/vignettes/pharmOncoX.Rmd
@@ -35,8 +35,6 @@ remotes::install_github('sigven/pharmOncoX')
 
 library(pharmOncoX)
 cache_dir <- tempdir()
-#cache_dir <- 
-#  "/Users/sigven/project_data/packages/package__pharmOncoX/pharmOncoX/data-raw/gd_local"
 
 ```