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Makefile.CP2
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Makefile.CP2
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#
# Makefile for CellProfiler 2 prerequisites
#
# CellProfiler is distributed under the GNU General Public License.
# See the accompanying file LICENSE for details.
#
# Copyright (c) 2003-2009 Massachusetts Institute of Technology
# Copyright (c) 2009-2014 Broad Institute
# All rights reserved.
#
# Please see the AUTHORS file for credits.
#
# Website: http://www.cellprofiler.org
#
# WARNING: this Makefile is unlikely to work correctly for
# CellProfiler revisions much beyond the most recent update to the
# Makefile itself. See the changelog below.
#
# CHANGELOG:
# 0.2.1.leek - 2011.02.14: Lee Kamentsky
# - added gettext package (needed on my system because gettext was version 1.4 and needed 1.7)
# - need patch for ilastik: http://gitorious.org/ilastik/ilastik-0_5_05a/archive-tarball/v0.5.05a
# - hdf5 1.8.5-patch1 no longer available: url now at 1.8.6
#
# 0.2.1 - 2011.02.08: Mario Emmenlauer
# - fixed swig/pcre issue, based on report from Nate Barlow
# - fixed several dependencies to libtiff, zlib, and similar
# - added checks for GIT, and improved all prechecks (robustness)
# - updated many packages, including all gtk sources
# 0.2.0 - 2011.01.30: Mario Emmenlauer
# - First feature-complete version
# - Updated: Python to 2.6.6, UMFpack/AMD/COLMOD, and
# ATLAS to 3.9.33
# - Added: ilastik, libhdf5, h5py, libpng, libboost
# - Changes:
# - Ensure that internal libs are used, not system fallback
# - Build a dynamic Python library (required for ilastik)
# 0.1.5 - 2011.01.24: Mario Emmenlauer
# - downgraded Cython to 0.12.1 after sinificantly more
# problems (related to GIL, likely caused by Cython).
# 0.1.4 - 2011.01.16: Mario Emmenlauer
# - updated several packages (MySQL, Cython, Atlas, Lapack,
# NumPy, Matplotlib, QT, PyQT)
# - fixed small issues here and there
# 0.1.3 - 2010.10.27: Mario Emmenlauer
# - updated SWIG, and GTK to same version as Ubuntu 10.10
# - added PCRE for use by SWIG
# - added gdk-pixbuf for use by GTK
# 0.1.2 - 2010.09.27: Mario Emmenlauer, Lee Kamentsky
# - more consequent use of SRCDIR for all archives
# - fixed several downloads where version number is part of URL
# 0.1.1 - 2010.09.25: Mario Emmenlauer
# - added MySQL and ncurses (prerequisite)
# - use TMPDIR, SRCDIR and PREFIX variables
# - fixed several issues
# 0.1.0 - 2010.09.21: Mario Emmenlauer
# - added GTK and its prerequisites (optional target "gtk")
# - touch downloaded packages to ensure recompile
# 0.0.6 - 2010.09.20: Lee Kamentsky, Mario Emmenlauer
# - fixed missing zlib dependency from Python
# - improved several prechecks (java and environemnt)
# - small other/layout changes
# 0.0.5 - 2010.09.14: Mario Emmenlauer
# - added SWIG to compile list
# - commented unneeded wxGTK package
# - small layout changes (mostly whitespace only)
# 0.0.4 - 2010.09.13: Lee Kamentsky (leek@broadinstitute.org)
# - fixed issue: explicitly enable gfortran for NumPy and SciPy
# - fixed issue: enable wxPython monolitic build
# - 2010.09.13: Mario Emmenlauer
# - added sanity checks for Makefile prerequisites
# - added more documentation, removed outdated package versions
# 0.0.3 - 2010.09.07: Mario Emmenlauer
# - Updated many packages to newest release
# - added source pointer URL for simpler updates
# 0.0.2 - 2010.07.12: Mario Emmenlauer
# - Added missing compile flag --enable-graphics_ctx to wxPython compile
# 0.0.1 - 2010.07.12: Mario Emmenlauer (mario.emmenlauer@unibas.ch)
# - Initial revision
#
# See http://cellprofiler.org for more information on CellProfiler
#
# This Makefile will download, unpack, compile and install all
# prerequisites for CP2, except for Java. It requires a fairly
# recent compiler (gcc) to compile ATLAS with optimal performance.
# Please disable CPU frequency scaling before compilation.
#
# PREREQUISITES:
# - It is recommended to have development files for GTK+. If you don't
# have (or want) GTK+, you can compile with a less optimal user interface
# using the WXUSEGTK="no" parameter for this Makefile.
# RedHat: yum install gtk2-devel
# Debian/Ubuntu: aptitude install libgtk2.0-dev
# Generic: "make gtk" with this Makefile
#
# VARIABLES:
# - set PREFIX to where you want to install your CellProfiler2 directory
#
# USAGE:
# - always invoke 'make' with the name of this Makefile, i.e.:
# make -f Makefile.CP2
# - supply variables that you want to set on the command line, i.e.:
# make -f Makefile.CP2 PREFIX="$HOME/usr/CellProfiler2" ...
# - if you want to first download all sources, use the "download" target:
# make -f Makefile.CP2 download
#
# After installation, you need to run the following every time
# you want to start CellProfiler (or place it in your SHELL
# startup scripts, i.e. ~/.bashrc for bash):
# CP2DEST="$HOME/usr/CellProfiler2"
# export PATH="${CP2DEST}/bin:${PATH}"
# export LD_LIBRARY_PATH="${CP2DEST}/lib:${CP2DEST}/lib64:${LD_LIBRARY_PATH}":${CP2DEST}/lib/mysql
# export PYTHONPATH="${CP2DEST}/lib/python2.5/site-packages:${PYTHONPATH}"
# export JAVA_HOME="<your path to JDK or JRE>"
#
# To run CellProfiler:
# cd ${CP2DEST}
# python CellProfiler.py -b
#
# To run Ilastik:
# python -m ilastik.ilastikMain
#
# MAKE_FLAGS is used for "make" compilation. -jN specifies N parallel
# build jobs for packages that support parallel compilation. Change or
# add other parameters as you like:
MAKE_FLAGS ?= -j4
PREFIX ?= $(HOME)/usr/CellProfiler2
SRCDIR ?= $(PWD)
TMPDIR ?= $(PWD)/tmp
# Set DISABLE_PRECHECKS to "YES" (case sensitive!) to explicitly
# disable prechecks. Disabling is not recommended. It may lead
# to failed builds because of missing/wrong dependencies.
DISABLE_PRECHECKS ?= NO
WXUSEGTK ?= yes
WGETFLAGS ?= --continue --tries=10 --timeout=60 --no-check-certificate
# Versions and prefixes of packages:
CELLPROFILERPREFIX ?= $(PREFIX)
CELLPROFILER_CO_URL = https://github.com/CellProfiler/CellProfiler.git
#PYVERSION = 2.5
PYVERSION = 2.6
#PYTHONVERSION = Python-$(PYVERSION).5
PYTHONVERSION = Python-$(PYVERSION).6
PYTHONPREFIX ?= $(PREFIX)
SITEPKGPREFIX = $(PYTHONPREFIX)/lib/python$(PYVERSION)/site-packages
SWIGVERSION = swig-2.0.1
SWIGPREFIX ?= $(PREFIX)
SWIGURL = http://www.swig.org/download.html
PCREVERSION = pcre-8.12
PCREPREFIX ?= $(PREFIX)
PCREURL = http://www.pcre.org/
PYPIVERSION = setuptools-0.6c11-py$(PYVERSION).egg
PYPIPREFIX ?= $(PREFIX)
PILVERSION = Imaging-1.1.7
PILPREFIX ?= $(PREFIX)
PILURL = http://www.pythonware.com/products/pil/
NCURSESVERSION = ncurses-5.7
NCURSESPREFIX ?= $(PREFIX)
#PYSQLITEVERSION = pysqlite-2.6.0
PYSQLITEVERSION = pysqlite-2.6.1
PYSQLITEPREFIX ?= $(PREFIX)
PYSQLITEURL = http://pypi.python.org/pypi/pysqlite/
#SQLITEVERSION = sqlite-autoconf-3070400
SQLITEVERSION = sqlite-autoconf-3070500
SQLITEPREFIX ?= $(PREFIX)
SQLITEURL = http://www.sqlite.org/download.html
#MYSQLVERSION = mysql-5.1.54
MYSQLVERSION = mysql-5.1.55
MYSQLPREFIX ?= $(PREFIX)
MYSQLURL = http://dev.mysql.com/downloads/mysql/5.1.html
MYSQLPYTHONVERSION = 1.2.3
MYSQLPYTHONURL = http://sourceforge.net/projects/mysql-python/
PYTHONNOSEVERSION = nose-0.11.3
PYTHONNOSEURL = http://code.google.com/p/python-nose/downloads/list
DECORATORVERSION = decorator-3.2.0
CYTHONVERSION = Cython-0.12.1
#CYTHONVERSION = Cython-0.14
CYTHONPREFIX ?= $(PREFIX)
CYTHONURL = http://www.cython.org/#download
#ATLASVERSION = atlas3.9.33
ATLASVERSION = atlas3.9.34
ATLASPREFIX ?= $(PREFIX)
ATLASURL = http://sourceforge.net/projects/math-atlas/files/
LAPACKVERSION = lapack-3.3.0
LAPACKFLAGS = -fPIC -m64
LAPACKURL = http://www.netlib.org/lapack/
VIGRAVERSION = vigra-1.7.1
VIGRAPREFIX ?= $(PREFIX)
VIGRAURL = http://hci.iwr.uni-heidelberg.de/vigra/
ILASTIKMAJVERSION = 0.5
ILASTIKMINVERSION = 05a
ILASTIKVERSION = $(ILASTIKMAJVERSION).$(ILASTIKMINVERSION)
ILASTIKPREFIX ?= $(PREFIX)
ILASTIKURL = http://gitorious.org/ilastik/ilastik-0_5_05a/archive-tarball/v0.5.05a
QIMGTOARRVERSION = qimage2ndarray-1.0
QIMGTOARRPREFIX ?= $(PREFIX)
QIMGTOARRURL = http://kogs-www.informatik.uni-hamburg.de/~meine/software/qimage2ndarray/
HDF5VERSION = hdf5-1.8.6
HDF5PREFIX ?= $(PREFIX)
H5PYVERSION = h5py-1.3.1
H5PYPREFIX ?= $(PREFIX)
H5PYURL = http://code.google.com/p/h5py/downloads/
FFTWVERSION = fftw-3.2.2
FFTWPREFIX ?= $(PREFIX)
NUMPYVERSION = numpy-1.5.1
NUMPYPREFIX ?= $(PREFIX)
NUMPYURL = http://sourceforge.net/projects/numpy/files/
SCIPYVERSION = scipy-0.8.0
SCIPYPREFIX ?= $(PREFIX)
SCIPYURL = http://sourceforge.net/projects/scipy/files/
UMFPACKVERSION = UMFPACK-5.5.1
UMFPACKPREFIX ?= $(PREFIX)
UMFPACKURL = http://www.cise.ufl.edu/research/sparse/umfpack/current/
CAMDVERSION = CAMD-2.2.2
CAMDPREFIX ?= $(PREFIX)
CAMDURL = http://www.cise.ufl.edu/research/sparse/camd/current/
CCOLAMDVERSION = CCOLAMD-2.7.3
CCOLAMDPREFIX ?= $(PREFIX)
CCOLAMDURL = http://www.cise.ufl.edu/research/sparse/ccolamd/current/
COLAMDVERSION = COLAMD-2.7.3
COLAMDPREFIX ?= $(PREFIX)
COLAMDURL = http://www.cise.ufl.edu/research/sparse/colamd/current/
CHOLMODVERSION = CHOLMOD-1.7.2
#CHOLMODVERSION = CHOLMOD-1.7.3
CHOLMODPREFIX ?= $(PREFIX)
CHOLMODURL = http://www.cise.ufl.edu/research/sparse/cholmod/current/
UFCONFIGVERSION = UFconfig-3.6.0
UFCONFIGURL = http://www.cise.ufl.edu/research/sparse/UFconfig/
AMDVERSION = AMD-2.2.2
AMDURL = http://www.cise.ufl.edu/research/sparse/amd/current/
MATPLOTLIBVERSION = matplotlib-1.0.1
MATPLOTLIBURL = http://sourceforge.net/projects/matplotlib/files/matplotlib/
WXPYTHONTOOLKIT_no = --without-gtk --disable-unicode --disable-gtktest --with-x11
WXPYTHONTOOLKIT_yes = --with-gtk --enable-unicode
WXPYTHONVERSION = 2.8.11.0
WXFLAGS = --with-opengl --enable-graphics_ctx --enable-shared --disable-compat24 --enable-compat26 --disable-sound --enable-monolithic --with-libpng --with-libjpeg --with-libtiff --with-zlib
WXPYTHONPREFIX ?= $(PREFIX)
WXPYTHONURL = http://www.wxpython.org/download.php#sources
PYOPENGLVERSION = PyOpenGL-3.0.1
PYOPENGLPREFIX ?= $(PREFIX)
PYOPENGLURL = http://pyopengl.sourceforge.net/documentation/installation.html
PYOPENGLACCELVERSION = accelerate-3.0.1
PYOPENGLACCELPREFIX ?= $(PREFIX)
PYOPENGLACCELURL = http://pyopengl.sourceforge.net/documentation/installation.html
QTVERSION = qt-everywhere-opensource-src-4.7.1
QTPREFIX ?= $(PREFIX)
QTFLAGS = -opengl -nomake examples -nomake demos -nomake translations -optimized-qmake -no-nas-sound -no-javascript-jit -opensource -no-qt3support -no-audio-backend -system-zlib -system-libtiff -system-libpng -system-libjpeg
SIPVERSION = sip-4.12.1
SIPPREFIX ?= $(PREFIX)
SIPURL = http://www.riverbankcomputing.co.uk/software/sip/download
PYQTVERSION = PyQt-x11-gpl-4.8.3
PYQTPREFIX ?= $(PREFIX)
PYQTURL = http://www.riverbankcomputing.co.uk/software/pyqt/download
JPEGVERSION = 8b
JPEGPREFIX ?= $(PREFIX)
ZLIBVERSION = zlib-1.2.5
ZLIBPREFIX ?= $(PREFIX)
PNGVERSION = libpng-1.4.5
PNGPREFIX ?= $(PREFIX)
PNGURL = http://www.libpng.org/pub/png/libpng.html
TIFFVERSION = tiff-3.9.4
TIFFPREFIX ?= $(PREFIX)
BOOSTVERSION = boost_1_45_0
BOOSTPREFIX ?= $(PREFIX)
# optional packages:
#GTKVERSION = gtk+-2.22.0
GTKVERSION = gtk+-2.22.1
GTKPREFIX = $(PREFIX)
#GLIBVERSION = glib-2.26.0
GLIBVERSION = glib-2.26.1
GLIBPREFIX = $(PREFIX)
#PANGOVERSION = pango-1.28.1
PANGOVERSION = pango-1.28.3
PANGOPREFIX = $(PREFIX)
#PIXMANVERSION = pixman-0.19.2
PIXMANVERSION = pixman-0.20.2
PIXMANPREFIX = $(PREFIX)
#GDKPIXBUFVERSION = gdk-pixbuf-2.21.5
GDKPIXBUFVERSION = gdk-pixbuf-2.22.1
GDKPIXBUFPREFIX = $(PREFIX)
ATKVERSION = atk-1.32.0
ATKPREFIX = $(PREFIX)
#CAIROVERSION = cairo-1.10.0
CAIROVERSION = cairo-1.10.2
CAIROPREFIX = $(PREFIX)
FONTCFGVERSION = fontconfig-2.8.0
FONTCFGPREFIX = $(PREFIX)
GETTEXTPREFIX = $(PREFIX)
GETTEXTVERSION = gettext-0.18.1.1
default: all
all: precheck cellprofiler
gtk: precheck libgtk
#
# Here we have all the tests for prerequisites of this Makefile
# Add as many (useful) tests as you like, the more the better.
# They just need to perform quickly!
# NOTE: Some of these prechecks where kindly provided by
# the XuvTools project at http://xuvtools.org/
#
precheck-java: $(SRCDIR)/findlibjvm.class
@if test "$(DISABLE_PRECHECKS)" != "YES" ; then \
if test -z "$(JAVA_HOME)" ; then \
echo "Could not detect JAVA_HOME variable. Please export JAVA_HOME from" ; \
echo "your SHELL to the path of the JRE, and add it to LD_LIBRARY_PATH." ; \
false ; \
elif ! echo "$(LD_LIBRARY_PATH)"|grep -qs "$(JAVA_HOME)" ; then \
echo "It seems JAVA_HOME is missing from the LD_LIBRARY_PATH variable." ; \
echo "Please read the setup guide on how to fix that." ; \
false ; \
else \
cd "$(SRCDIR)" && \
LIBJVMPATH=$$(java findlibjvm 2>/dev/zero) && \
if ! test -r "$${LIBJVMPATH}/libjvm.so" ; then \
echo "Could not find 'libjvm.so' in the following path:" ; \
echo " '$${LIBJVMPATH}'" ; \
echo "Please read the setup guide on how to fix that." ; \
false ; \
fi ; \
fi ; \
fi
precheck-env:
@if test "$(DISABLE_PRECHECKS)" != "YES" ; then \
if test -z "$(HOSTTYPE)" ; then \
echo "Could not detect HOSTTYPE variable. Please export HOSTTYPE from" ; \
echo "your SHELL to set the default architecture of the build." ; \
false ; \
elif test -n "$(CPPFLAGS)" -o -n "$(LDFLAGS)" ; then \
echo "The CPPFLAGS and/or LDFLAGS variables are set. Likely, numpy" ; \
echo "will not compile because external flags override theirs." ; \
echo "Please unset these variables unless you know what you are doing." ; \
false ; \
fi ; \
fi
precheck-git:
@if ! git --version 2>&1|grep -iqs '^git.*version [1-9][0-9]*\.[0-9][0-9]*\.[0-9][0-9]*' && test "$(DISABLE_PRECHECKS)" != "YES" ; then \
echo "Could not detect GIT revision management system, please compile" ; \
echo "or install git for your platform. Alternatively, you can disable" ; \
echo "ilastik (it is optional), or download and compile it manually." ; \
false ; \
fi
precheck-svn:
@if ! svn --version 2>&1|grep -iqs '^svn.*version [1-9][0-9]*\.[0-9][0-9]*\.[0-9][0-9]*' && test "$(DISABLE_PRECHECKS)" != "YES" ; then \
echo "Could not detect a recent version of Subversion (>= 1.4.0)," ; \
echo "please compile or install Subversion/SVN." ; \
echo "You can also try to install SVN for your Linux distribution." ; \
false ; \
fi
precheck-wget:
@if ! wget --help 2>&1|grep -qs -- '--no-check-certificate' && test "$(DISABLE_PRECHECKS)" != "YES" ; then \
echo "Your wget does not support the '--no-check-certificate' attribute." ; \
echo "You need a newer wget, or you need to disable the use of the" ; \
echo "attribute '--no-check-certificate' in this Makefile. To do that," ; \
echo "try to add to the command-line WGETFLAGS=\"\"." ; \
false ; \
fi
precheck-cmake:
@if ! cmake --version 2>/dev/zero|grep -iqs '^cmake.* 2\.[8-9]\|^cmake.* [3-9]\.' && test "$(DISABLE_PRECHECKS)" != "YES" ; then \
echo "Could not detect a recent cmake build system (>=2.8.0)," ; \
echo "it is unlikely that ilastik will compile! Please install cmake" ; \
echo "separately, or remove ilastik from the default build." ; \
false ; \
fi
precheck-gcc:
@if ! gcc --version 2>/dev/zero|grep -iqs '^gcc.* [4-9]\.[2-9][0-9]*\.[0-9][0-9]*' && test "$(DISABLE_PRECHECKS)" != "YES" ; then \
echo "Could not detect a recent GCC C compiler version (>=4.2.0)," ; \
echo "it is very unlikely that you will be able to compile fast code!" ; \
false ; \
fi
precheck-gpp:
@if ! g++ --version 2>/dev/zero|grep -iqs '^g++.* [4-9]\.[2-9][0-9]*\.[0-9][0-9]*' && test "$(DISABLE_PRECHECKS)" != "YES" ; then \
echo "Could not detect a recent GCC C++ compiler version (>=4.2.0)," ; \
echo "it is very unlikely that you will be able to compile fast code!" ; \
false ; \
fi
precheck-gfortran:
@if ! gfortran --version 2>/dev/zero|grep -iqs '^GNU Fortran.* [4-9]\.[2-9][0-9]*\.[0-9][0-9]*' && test "$(DISABLE_PRECHECKS)" != "YES" ; then \
echo "Could not detect a recent GCC Fortran 95 compiler version (>=4.2.0)," ; \
echo "it is very unlikely that you will be able to compile fast code!" ; \
false ; \
fi
precheck-success:
@echo "All pre-checks executed successfully."
precheck: precheck-java precheck-env precheck-svn precheck-git precheck-gcc precheck-gpp precheck-gfortran precheck-wget precheck-cmake precheck-success
.PHONY: precheck-java precheck-env precheck-svn precheck-git precheck-gcc precheck-gpp precheck-gfortran precheck-wget precheck-cmake precheck-success precheck clean update
#
# Here come the actual compile instructions for CP2 prerequisites,
# package by package. There is no strict ordering, but it was coded
# top-to-bottom, so you may assume that later specified packages
# depend on earlier specified packages.
#
python: $(PYTHONPREFIX)/bin/python
$(PYTHONPREFIX)/bin/python: $(SRCDIR)/$(PYTHONVERSION).tar.bz2 $(SQLITEPREFIX)/lib/libsqlite3.la $(ZLIBPREFIX)/lib/libz.a
mkdir -p "$(TMPDIR)" && cd "$(TMPDIR)" && \
rm -fr "$(PYTHONVERSION)" && \
tar -xjf "$(SRCDIR)/$(PYTHONVERSION).tar.bz2" && \
cd "$(PYTHONVERSION)" && \
export LD_LIBRARY_PATH="$(PYTHONPREFIX)/lib:$${LD_LIBRARY_PATH}" && \
export C_INCLUDE_PATH="$(PYTHONPREFIX)/include:$(C_INCLUDE_PATH)" && \
./configure \
--prefix="$(PYTHONPREFIX)" \
--enable-shared && \
$(MAKE) $(MAKE_FLAGS) && \
$(MAKE) -j1 install
cython: $(CYTHONPREFIX)/bin/cython
$(CYTHONPREFIX)/bin/cython: $(SRCDIR)/$(CYTHONVERSION).tar.gz $(PYTHONPREFIX)/bin/python $(PYPIPREFIX)/bin/easy_install
mkdir -p "$(TMPDIR)" && cd "$(TMPDIR)" && \
rm -fr "$(CYTHONVERSION)" && \
tar -xzf "$(SRCDIR)/$(CYTHONVERSION).tar.gz" && \
cd "$(CYTHONVERSION)" && \
export PATH="$(PYTHONPREFIX)/bin:$(PATH)" && \
export LD_LIBRARY_PATH="$(PYTHONPREFIX)/lib:$${LD_LIBRARY_PATH}" && \
$(PYTHONPREFIX)/bin/python setup.py install
lapack: $(TMPDIR)/$(LAPACKVERSION)/lapack_LINUX.a
$(TMPDIR)/$(LAPACKVERSION)/lapack_LINUX.a: $(SRCDIR)/$(LAPACKVERSION).tgz
cpufreq-selector -g performance || true && \
mkdir -p "$(TMPDIR)" && cd "$(TMPDIR)" && \
rm -fr "$(LAPACKVERSION)" && \
tar -zxf "$(SRCDIR)/$(LAPACKVERSION).tgz" && \
cd "$(LAPACKVERSION)" && \
cp ./INSTALL/make.inc.gfortran ./make.inc && \
perl -pi -e 's/(^OPTS.*)/$$1 $(LAPACKFLAGS)/g' ./make.inc && \
perl -pi -e 's/(^NOOPT.*)/$$1 $(LAPACKFLAGS)/g' ./make.inc && \
perl -pi -e 's/(^FORTRAN.*?)=.*/$$1= gfortran $(LAPACKFLAGS)/g' ./make.inc && \
perl -pi -e 's/(^LOADER.*?)=.*/$$1= gfortran/g' ./make.inc && \
cd "./SRC/" && \
export PATH="$(PYTHONPREFIX)/bin:$(PATH)" && \
export LD_LIBRARY_PATH="$(PYTHONPREFIX)/lib:$${LD_LIBRARY_PATH}" && \
$(MAKE) $(MAKE_FLAGS)
atlas: $(ATLASPREFIX)/lib/libatlas.a
$(ATLASPREFIX)/lib/libatlas.a: $(SRCDIR)/$(ATLASVERSION).tar.bz2 $(TMPDIR)/$(LAPACKVERSION)/lapack_LINUX.a
cpufreq-selector -g performance ; \
mkdir -p "$(TMPDIR)" && cd "$(TMPDIR)" && \
rm -fr "./ATLAS" && \
tar -jxf "$(SRCDIR)/$(ATLASVERSION).tar.bz2" && \
cd "./ATLAS/" && \
mkdir -p "./$(HOSTTYPE)" && \
cd "./$(HOSTTYPE)/" && \
export PATH="$(PYTHONPREFIX)/bin:$(PATH)" && \
export LD_LIBRARY_PATH="$(PYTHONPREFIX)/lib:$${LD_LIBRARY_PATH}" && \
../configure \
-Fa alg -fPIC -b 64 \
-Ss flapack "$(TMPDIR)/$(LAPACKVERSION)/lapack_LINUX.a" \
-Ss pmake "make -j4" -Si cputhrchk 0 \
--prefix="$(ATLASPREFIX)" && \
$(MAKE) && \
mkdir tmp && \
cd tmp && \
ar x ../lib/liblapack.a && \
mv ../lib/liblapack.a ../lib/liblapack_ATLAS.a && \
cp "$(TMPDIR)/$(LAPACKVERSION)/lapack_LINUX.a" ../lib/liblapack.a && \
ar r ../lib/liblapack.a *.o && \
cd ../ && \
$(MAKE) check && \
$(MAKE) install
umfpack: $(UMFPACKPREFIX)/lib/libumfpack.a
$(UMFPACKPREFIX)/lib/libumfpack.a: $(SRCDIR)/$(UMFPACKVERSION).tar.gz $(SRCDIR)/$(CAMDVERSION).tar.gz $(SRCDIR)/$(CCOLAMDVERSION).tar.gz $(SRCDIR)/$(COLAMDVERSION).tar.gz $(SRCDIR)/$(CHOLMODVERSION).tar.gz $(SRCDIR)/$(UFCONFIGVERSION).tar.gz $(SRCDIR)/$(AMDVERSION).tar.gz $(ATLASPREFIX)/lib/libatlas.a
mkdir -p "$(TMPDIR)" && cd "$(TMPDIR)" && \
rm -fr "CHOLMOD" && \
rm -fr "COLAMD" && \
rm -fr "CCOLAMD" && \
rm -fr "CAMD" && \
rm -fr "UMFPACK" && \
rm -fr "UFconfig" && \
rm -fr "AMD" && \
tar -xzf "$(SRCDIR)/$(CHOLMODVERSION).tar.gz" && \
tar -xzf "$(SRCDIR)/$(COLAMDVERSION).tar.gz" && \
tar -xzf "$(SRCDIR)/$(CCOLAMDVERSION).tar.gz" && \
tar -xzf "$(SRCDIR)/$(CAMDVERSION).tar.gz" && \
tar -xzf "$(SRCDIR)/$(UMFPACKVERSION).tar.gz" && \
tar -xzf "$(SRCDIR)/$(UFCONFIGVERSION).tar.gz" && \
tar -xzf "$(SRCDIR)/$(AMDVERSION).tar.gz" && \
perl -pi -e 's@(^CHOLMOD_CONFIG )=.*@$$1= -DNPARTITION@g' UFconfig/UFconfig.mk && \
perl -pi -e 's@(^CC )=.*@$$1= gcc@g' UFconfig/UFconfig.mk && \
perl -pi -e 's@(^CFLAGS .*)@$$1 -m64 -fPIC@g' UFconfig/UFconfig.mk && \
perl -pi -e 's@(^F77 )=.*@$$1= gfortran@g' UFconfig/UFconfig.mk && \
perl -pi -e 's@(^F77FLAGS .*)@$$1 -m64 -fPIC@g' UFconfig/UFconfig.mk && \
perl -pi -e 's@(^BLAS )=.*@$$1= -L$(ATLASPREFIX)/lib -llapack -lf77blas -lcblas -latlas -lgfortran@g' UFconfig/UFconfig.mk && \
perl -pi -e 's@(^LAPACK )=.*@$$1= -L$(ATLASPREFIX)/lib -llapack -lf77blas -lcblas -latlas -lgfortran@g' UFconfig/UFconfig.mk && \
perl -pi -e 's@(^METIS_PATH )=.*@$$1= @g' UFconfig/UFconfig.mk && \
perl -pi -e 's@(^METIS )=.*@$$1= @g' UFconfig/UFconfig.mk && \
perl -pi -e 's@(^INSTALL_LIB )=.*@$$1= $(UMFPACKPREFIX)/lib@g' UFconfig/UFconfig.mk && \
perl -pi -e 's@(^INSTALL_INCLUDE )=.*@$$1= $(UMFPACKPREFIX)/include@g' UFconfig/UFconfig.mk && \
export PATH="$(PYTHONPREFIX)/bin:$(PATH)" && \
export LD_LIBRARY_PATH="$(PYTHONPREFIX)/lib:$${LD_LIBRARY_PATH}" && \
cd "UMFPACK" && \
$(MAKE) $(MAKE_FLAGS) && \
$(MAKE) -j1 install && \
cp -p "../AMD/Include/amd.h" "$(UMFPACKPREFIX)/include/" && \
cp -p "../UFconfig/UFconfig.h" "$(UMFPACKPREFIX)/include/"
fftw: $(FFTWPREFIX)/lib/libfftw3.la $(FFTWPREFIX)/lib/libfftw3l.la $(FFTWPREFIX)/lib/libfftw3f.la
$(FFTWPREFIX)/lib/libfftw3.la: $(SRCDIR)/$(FFTWVERSION).tar.gz
mkdir -p "$(TMPDIR)" && cd "$(TMPDIR)" && \
rm -fr "$(FFTWVERSION)" && \
tar -xzf "$(SRCDIR)/$(FFTWVERSION).tar.gz" && \
cd "$(FFTWVERSION)" && \
./configure \
--enable-sse2 \
--enable-shared \
--prefix="$(FFTWPREFIX)" && \
$(MAKE) $(MAKE_FLAGS) && \
$(MAKE) -j1 install
$(FFTWPREFIX)/lib/libfftw3l.la: $(SRCDIR)/$(FFTWVERSION).tar.gz
mkdir -p "$(TMPDIR)" && cd "$(TMPDIR)" && \
rm -fr "$(FFTWVERSION)" && \
tar -xzf "$(SRCDIR)/$(FFTWVERSION).tar.gz" && \
cd "$(FFTWVERSION)" && \
./configure \
--enable-long-double \
--enable-shared \
--prefix="$(FFTWPREFIX)" && \
$(MAKE) $(MAKE_FLAGS) && \
$(MAKE) -j1 install
$(FFTWPREFIX)/lib/libfftw3f.la: $(SRCDIR)/$(FFTWVERSION).tar.gz $(FFTWPREFIX)/lib/libfftw3.la $(FFTWPREFIX)/lib/libfftw3l.la
mkdir -p "$(TMPDIR)" && cd "$(TMPDIR)" && \
rm -fr "$(FFTWVERSION)" && \
tar -xzf "$(SRCDIR)/$(FFTWVERSION).tar.gz" && \
cd "$(FFTWVERSION)" && \
./configure \
--enable-float \
--enable-sse \
--enable-shared \
--prefix="$(FFTWPREFIX)" && \
$(MAKE) $(MAKE_FLAGS) && \
$(MAKE) -j1 install
numpy: $(NUMPYPREFIX)/lib/python$(PYVERSION)/site-packages/$(NUMPYVERSION)-py$(PYVERSION).egg-info
$(NUMPYPREFIX)/lib/python$(PYVERSION)/site-packages/$(NUMPYVERSION)-py$(PYVERSION).egg-info: $(SRCDIR)/$(NUMPYVERSION).tar.gz $(PYTHONPREFIX)/bin/python $(UMFPACKPREFIX)/lib/libumfpack.a $(ATLASPREFIX)/lib/libatlas.a $(FFTWPREFIX)/lib/libfftw3f.la $(PYPIPREFIX)/bin/easy_install
mkdir -p "$(TMPDIR)" && cd "$(TMPDIR)" && \
rm -fr "$(NUMPYVERSION)" && \
tar -zxf "$(SRCDIR)/$(NUMPYVERSION).tar.gz" && \
cd "$(NUMPYVERSION)" && \
cp site.cfg.example site.cfg && \
perl -pi -e 's@#(\[DEFAULT\])@$$1@g' site.cfg && \
perl -pi -e 's@#(library_dirs.*)@$$1:$(PYTHONPREFIX)/lib@g' site.cfg && \
perl -pi -e 's@#(include_dirs.*)@$$1:$(PYTHONPREFIX)/include@g' site.cfg && \
perl -pi -e 's@#(\[lapack_opt\])@$$1@g' site.cfg && \
perl -pi -e 's@#(libraries = lapack, f77blas, cblas, atlas)@$$1, gfortran@g' site.cfg && \
perl -pi -e 's@#(\[amd\])@$$1@g' site.cfg && \
perl -pi -e 's@#(amd_libs)@$$1@g' site.cfg && \
perl -pi -e 's@#(\[umfpack\])@$$1@g' site.cfg && \
perl -pi -e 's@#(umfpack_libs)@$$1@g' site.cfg && \
perl -pi -e 's@#(\[fftw\])@$$1@g' site.cfg && \
perl -pi -e 's@#(libraries = fftw3)@$$1@g' site.cfg && \
perl -pi -e 's@#(\[djbfft\])@$$1@g' site.cfg && \
export MKL="None" && \
export PATH="$(PYTHONPREFIX)/bin:$(PATH)" && \
export LD_LIBRARY_PATH="$(PYTHONPREFIX)/lib:$${LD_LIBRARY_PATH}" && \
$(PYTHONPREFIX)/bin/python setup.py build --fcompiler=gfortran && \
$(PYTHONPREFIX)/bin/python setup.py install
pcre: $(PCREPREFIX)/bin/pcre-config
$(PCREPREFIX)/bin/pcre-config: $(SRCDIR)/$(PCREVERSION).tar.bz2
mkdir -p "$(TMPDIR)" && cd "$(TMPDIR)" && \
rm -fr "$(PCREVERSION)" && \
tar -xjf "$(SRCDIR)/$(PCREVERSION).tar.bz2" && \
cd "$(PCREVERSION)" && \
./configure \
--prefix="$(PCREPREFIX)" && \
$(MAKE) $(MAKE_FLAGS) && \
$(MAKE) -j1 install
swig: $(SWIGPREFIX)/bin/swig
$(SWIGPREFIX)/bin/swig: $(SRCDIR)/$(SWIGVERSION).tar.gz $(PCREPREFIX)/bin/pcre-config
mkdir -p "$(TMPDIR)" && cd "$(TMPDIR)" && \
rm -fr "$(SWIGVERSION)" && \
tar -xzf "$(SRCDIR)/$(SWIGVERSION).tar.gz" && \
cd "$(SWIGVERSION)" && \
export PCRE_CONFIG="$(PCREPREFIX)/bin/pcre-config" && \
export LD_LIBRARY_PATH="$(PCREPREFIX)/lib:$${LD_LIBRARY_PATH}" && \
./configure \
--prefix="$(SWIGPREFIX)" \
--with-python="$(PYTHONPREFIX)/bin/python" \
--without-python3 && \
$(MAKE) $(MAKE_FLAGS) && \
$(MAKE) -j1 install
scipy: $(SCIPYPREFIX)/lib/python$(PYVERSION)/site-packages/$(SCIPYVERSION)-py$(PYVERSION).egg-info
$(SCIPYPREFIX)/lib/python$(PYVERSION)/site-packages/$(SCIPYVERSION)-py$(PYVERSION).egg-info: $(SRCDIR)/$(SCIPYVERSION).tar.gz $(PYTHONPREFIX)/bin/python $(UMFPACKPREFIX)/lib/libumfpack.a $(ATLASPREFIX)/lib/libatlas.a $(NUMPYPREFIX)/lib/python$(PYVERSION)/site-packages/$(NUMPYVERSION)-py$(PYVERSION).egg-info $(PYPIPREFIX)/bin/easy_install $(PYTHONPREFIX)/bin/swig
mkdir -p "$(TMPDIR)" && cd "$(TMPDIR)" && \
rm -fr "$(SCIPYVERSION)" && \
tar -zxf "$(SRCDIR)/$(SCIPYVERSION).tar.gz" && \
cd "$(SCIPYVERSION)" && \
export PATH="$(PYTHONPREFIX)/bin:$(PATH)" && \
export LD_LIBRARY_PATH="$(PYTHONPREFIX)/lib:$${LD_LIBRARY_PATH}" && \
$(PYTHONPREFIX)/bin/python setup.py build --fcompiler=gfortran && \
$(PYTHONPREFIX)/bin/python setup.py install
matplotlib: $(SITEPKGPREFIX)/$(MATPLOTLIBVERSION)-py$(PYVERSION).egg-info
$(SITEPKGPREFIX)/$(MATPLOTLIBVERSION)-py$(PYVERSION).egg-info: $(SRCDIR)/$(MATPLOTLIBVERSION).tar.gz $(PNGPREFIX)/lib/libpng.la $(TIFFPREFIX)/lib/libtiff.la $(JPEGPREFIX)/lib/libjpeg.la $(PYTHONPREFIX)/bin/python $(NUMPYPREFIX)/lib/python$(PYVERSION)/site-packages/$(NUMPYVERSION)-py$(PYVERSION).egg-info $(WXPYTHONPREFIX)/bin/pywxrc $(SITEPKGPREFIX)/PyQt4/pyqtconfig.py
mkdir -p "$(TMPDIR)" && cd "$(TMPDIR)" && \
rm -fr "$(MATPLOTLIBVERSION)" && \
tar -zxf "$(SRCDIR)/$(MATPLOTLIBVERSION).tar.gz" && \
cd "$(MATPLOTLIBVERSION)" && \
export PATH="$(PYTHONPREFIX)/bin:$(PATH)" && \
export LD_LIBRARY_PATH="$(PYTHONPREFIX)/lib:$${LD_LIBRARY_PATH}" && \
export PKG_CONFIG_PATH="$(GLIBPREFIX)/lib/pkgconfig:$(PANGOPREFIX)/lib/pkgconfig:$${PKG_CONFIG_PATH}" && \
export CPPFLAGS="-I$(PNGPREFIX)/include -I$(JPEGPREFIX)/include -I$(TIFFPREFIX)/include -I$(ZLIBPREFIX)/include $${CPPFLAGS}" && \
export LDFLAGS="-L$(PNGPREFIX)/lib -L$(JPEGPREFIX)/lib -L$(TIFFPREFIX)/lib -L$(ZLIBPREFIX)/lib $${LDFLAGS}" && \
export LD_LIBRARY_PATH="$(PNGPREFIX)/lib:$(JPEGPREFIX)/lib:$(TIFFPREFIX)/lib:$(ZLIBPREFIX)/lib:$${LD_LIBRARY_PATH}" && \
$(PYTHONPREFIX)/bin/python setup.py build && \
$(PYTHONPREFIX)/bin/python setup.py install
pypi: $(PYPIPREFIX)/bin/easy_install
$(PYPIPREFIX)/bin/easy_install: $(SRCDIR)/$(PYPIVERSION) $(PYTHONPREFIX)/bin/python
export PATH="$(PYTHONPREFIX)/bin:$(PATH)" && \
export LD_LIBRARY_PATH="$(PYTHONPREFIX)/lib:$${LD_LIBRARY_PATH}" && \
sh $(PYPIVERSION) --prefix="$(PYTHONPREFIX)"
decorator: $(SITEPKGPREFIX)/$(DECORATORVERSION)-py$(PYVERSION).egg
$(SITEPKGPREFIX)/$(DECORATORVERSION)-py$(PYVERSION).egg: $(SRCDIR)/$(DECORATORVERSION).tar.gz $(PYTHONPREFIX)/bin/python $(PYPIPREFIX)/bin/easy_install
mkdir -p "$(TMPDIR)" && cd "$(TMPDIR)" && \
rm -fr "$(DECORATORVERSION)" && \
tar -xzf "$(SRCDIR)/$(DECORATORVERSION).tar.gz" && \
cd "$(DECORATORVERSION)" && \
export PATH="$(PYTHONPREFIX)/bin:$(PATH)" && \
export LD_LIBRARY_PATH="$(PYTHONPREFIX)/lib:$${LD_LIBRARY_PATH}" && \
$(PYTHONPREFIX)/bin/python setup.py install
ncurses: $(NCURSESPREFIX)/lib/libncursesw.a
$(NCURSESPREFIX)/lib/libncursesw.a: $(SRCDIR)/$(NCURSESVERSION).tar.gz
mkdir -p "$(TMPDIR)" && cd "$(TMPDIR)" && \
rm -fr "$(NCURSESVERSION)" && \
tar -xzf "$(SRCDIR)/$(NCURSESVERSION).tar.gz" && \
cd "$(NCURSESVERSION)" && \
./configure \
--prefix="$(NCURSESPREFIX)" \
--with-shared \
--without-ada \
--without-debug \
--enable-widec && \
$(MAKE) $(MAKE_FLAGS) && \
$(MAKE) -j1 install
sqlite: $(SQLITEPREFIX)/lib/libsqlite3.la
$(SQLITEPREFIX)/lib/libsqlite3.la: $(SRCDIR)/$(SQLITEVERSION).tar.gz $(ZLIBPREFIX)/lib/libz.a
mkdir -p "$(TMPDIR)" && cd "$(TMPDIR)" && \
rm -fr "$(SQLITEVERSION)" && \
tar -zxf "$(SRCDIR)/$(SQLITEVERSION).tar.gz" && \
cd "$(SQLITEVERSION)" && \
export CPPFLAGS="-I$(ZLIBPREFIX)/include $${CPPFLAGS}" && \
export LDFLAGS="-L$(ZLIBPREFIX)/lib $${LDFLAGS}" && \
export LD_LIBRARY_PATH="$(ZLIBPREFIX)/lib:$${LD_LIBRARY_PATH}" && \
./configure \
--prefix="$(SQLITEPREFIX)" && \
$(MAKE) $(MAKE_FLAGS) && \
$(MAKE) -j1 install
pysqlite: $(PYSQLITEPREFIX)/lib/python$(PYVERSION)/site-packages/$(PYSQLITEVERSION)-py$(PYVERSION).egg-info
$(PYSQLITEPREFIX)/lib/python$(PYVERSION)/site-packages/$(PYSQLITEVERSION)-py$(PYVERSION).egg-info: $(SRCDIR)/$(PYSQLITEVERSION).tar.gz $(PYTHONPREFIX)/bin/python $(SQLITEPREFIX)/lib/libsqlite3.la $(ZLIBPREFIX)/lib/libz.a
mkdir -p "$(TMPDIR)" && cd "$(TMPDIR)" && \
rm -fr "$(PYSQLITEVERSION)" && \
tar -zxf "$(SRCDIR)/$(PYSQLITEVERSION).tar.gz" && \
cd "$(PYSQLITEVERSION)" && \
export PATH="$(PYTHONPREFIX)/bin:$(PATH)" && \
export LD_LIBRARY_PATH="$(PYTHONPREFIX)/lib:$${LD_LIBRARY_PATH}" && \
export CPPFLAGS="-I$(SQLITEPREFIX)/include $${CPPFLAGS}" && \
export LDFLAGS="-L$(SQLITEPREFIX)/lib $${LDFLAGS}" && \
export LD_LIBRARY_PATH="$(SQLITEPREFIX)/lib:$${LD_LIBRARY_PATH}" && \
$(PYTHONPREFIX)/bin/python setup.py build && \
$(PYTHONPREFIX)/bin/python setup.py install
mysql: $(PYTHONPREFIX)/lib/mysql/libmysqlclient.la
$(PYTHONPREFIX)/lib/mysql/libmysqlclient.la: $(SRCDIR)/$(MYSQLVERSION).tar.gz $(ZLIBPREFIX)/lib/libz.a $(NCURSESPREFIX)/lib/libncursesw.a
mkdir -p "$(TMPDIR)" && cd "$(TMPDIR)" && \
rm -fr "$(MYSQLVERSION)" && \
tar -zxf "$(SRCDIR)/$(MYSQLVERSION).tar.gz" && \
cd "$(MYSQLVERSION)" && \
export CPPFLAGS="-I$(NCURSESPREFIX)/include $${CPPFLAGS}" && \
export LDFLAGS="-L$(NCURSESPREFIX)/lib $${LDFLAGS}" && \
export LD_LIBRARY_PATH="$(NCURSESPREFIX)/lib:$${LD_LIBRARY_PATH}" && \
./configure \
--prefix="$(MYSQLPREFIX)" \
--with-zlib-dir="$(ZLIBPREFIX)" \
--disable-community-features \
--without-server \
--without-docs && \
$(MAKE) $(MAKE_FLAGS) && \
$(MAKE) -j1 install
mysqlpython: $(SITEPKGPREFIX)/MySQL_python-$(MYSQLPYTHONVERSION)-py$(PYVERSION)-linux-x86_64.egg
$(SITEPKGPREFIX)/MySQL_python-$(MYSQLPYTHONVERSION)-py$(PYVERSION)-linux-x86_64.egg: $(SRCDIR)/MySQL-python-$(MYSQLPYTHONVERSION).tar.gz $(PYTHONPREFIX)/bin/python $(PYPIPREFIX)/bin/easy_install $(PYTHONPREFIX)/lib/mysql/libmysqlclient.la
mkdir -p "$(TMPDIR)" && cd "$(TMPDIR)" && \
rm -fr "MySQL-python-$(MYSQLPYTHONVERSION)" && \
tar -xzf "$(SRCDIR)/MySQL-python-$(MYSQLPYTHONVERSION).tar.gz" && \
cd "MySQL-python-$(MYSQLPYTHONVERSION)" && \
export PATH="$(PYTHONPREFIX)/bin:$(PATH)" && \
export LD_LIBRARY_PATH="$(PYTHONPREFIX)/lib:$${LD_LIBRARY_PATH}" && \
$(PYTHONPREFIX)/bin/python setup.py build && \
$(PYTHONPREFIX)/bin/python setup.py install
pyopengl: $(SITEPKGPREFIX)/$(PYOPENGLVERSION)-py$(PYVERSION).egg-info
$(SITEPKGPREFIX)/$(PYOPENGLVERSION)-py$(PYVERSION).egg-info: $(SRCDIR)/$(PYOPENGLVERSION).tar.gz $(PYTHONPREFIX)/bin/python $(NUMPYPREFIX)/lib/python$(PYVERSION)/site-packages/$(NUMPYVERSION)-py$(PYVERSION).egg-info $(PYTHONPREFIX)/bin/pilfile.py
mkdir -p "$(TMPDIR)" && cd "$(TMPDIR)" && \
rm -fr "$(PYOPENGLVERSION)" && \
tar -zxf "$(SRCDIR)/$(PYOPENGLVERSION).tar.gz" && \
cd "$(PYOPENGLVERSION)" && \
export PATH="$(PYTHONPREFIX)/bin:$(PATH)" && \
export LD_LIBRARY_PATH="$(PYTHONPREFIX)/lib:$${LD_LIBRARY_PATH}" && \
$(PYTHONPREFIX)/bin/python setup.py build && \
$(PYTHONPREFIX)/bin/python setup.py install
pyopenglaccel: $(SITEPKGPREFIX)/PyOpenGL_$(PYOPENGLACCELVERSION)-py$(PYVERSION).egg-info
$(SITEPKGPREFIX)/PyOpenGL_$(PYOPENGLACCELVERSION)-py$(PYVERSION).egg-info: $(SRCDIR)/PyOpenGL-$(PYOPENGLACCELVERSION).tar.gz $(PYTHONPREFIX)/bin/python $(SITEPKGPREFIX)/$(PYOPENGLVERSION)-py$(PYVERSION).egg-info $(NUMPYPREFIX)/lib/python$(PYVERSION)/site-packages/$(NUMPYVERSION)-py$(PYVERSION).egg-info $(PYTHONPREFIX)/bin/pilfile.py
mkdir -p "$(TMPDIR)" && cd "$(TMPDIR)" && \
rm -fr "PyOpenGL-$(PYOPENGLACCELVERSION)" && \
tar -zxf "$(SRCDIR)/PyOpenGL-$(PYOPENGLACCELVERSION).tar.gz" && \
cd "PyOpenGL-$(PYOPENGLACCELVERSION)" && \
export PATH="$(PYTHONPREFIX)/bin:$(PATH)" && \
export LD_LIBRARY_PATH="$(PYTHONPREFIX)/lib:$${LD_LIBRARY_PATH}" && \
$(PYTHONPREFIX)/bin/python setup.py build && \
$(PYTHONPREFIX)/bin/python setup.py install
qt: qmake
qmake: $(QTPREFIX)/lib/libQtCore.la
$(QTPREFIX)/lib/libQtCore.la: $(SRCDIR)/$(QTVERSION).tar.gz $(PNGPREFIX)/lib/libpng.la $(JPEGPREFIX)/lib/libjpeg.la $(ZLIBPREFIX)/lib/libz.a $(TIFFPREFIX)/lib/libtiff.la
mkdir -p "$(TMPDIR)" && cd "$(TMPDIR)" && \
rm -fr "$(QTVERSION)" && \
tar -xzf "$(SRCDIR)/$(QTVERSION).tar.gz" && \
cd "$(QTVERSION)" && \
export LD_LIBRARY_PATH="$(PNGPREFIX)/lib:$(JPEGPREFIX)/lib:$(TIFFPREFIX)/lib:$(ZLIBPREFIX)/lib:$${LD_LIBRARY_PATH}" && \
echo "yes"|./configure -prefix "$(QTPREFIX)" \
-I"$(PNGPREFIX)/include" -I"$(JPEGPREFIX)/include" -I"$(TIFFPREFIX)/include" -I"$(ZLIBPREFIX)/include" -I"$(SQLITEPREFIX)/include" \
-L"$(PNGPREFIX)/lib" -L"$(JPEGPREFIX)/lib" -L"$(TIFFPREFIX)/lib" -L"$(ZLIBPREFIX)/lib" -L"$(SQLITEPREFIX)/lib -lsqlite3" \
$(QTFLAGS) && \
$(MAKE) $(MAKE_FLAGS) && \
$(MAKE) -j1 install
pyqt: $(SITEPKGPREFIX)/PyQt4/pyqtconfig.py
$(SITEPKGPREFIX)/PyQt4/pyqtconfig.py: $(SRCDIR)/$(PYQTVERSION).tar.gz $(PYTHONPREFIX)/bin/python $(QTPREFIX)/lib/libQtCore.la $(SITEPKGPREFIX)/sip.so $(SITEPKGPREFIX)/PyOpenGL_$(PYOPENGLACCELVERSION)-py$(PYVERSION).egg-info $(SITEPKGPREFIX)/$(PYOPENGLVERSION)-py$(PYVERSION).egg-info
mkdir -p "$(TMPDIR)" && cd "$(TMPDIR)" && \
rm -fr "$(PYQTVERSION)" && \
tar -zxf "$(SRCDIR)/$(PYQTVERSION).tar.gz" && \
cd "$(PYQTVERSION)" && \
export PATH="$(PYTHONPREFIX)/bin:$(PATH)" && \
export LD_LIBRARY_PATH="$(PYTHONPREFIX)/lib:$${LD_LIBRARY_PATH}" && \
$(PYTHONPREFIX)/bin/python configure.py --confirm-license && \
$(MAKE) $(MAKE_FLAGS) && \
$(MAKE) -j1 install
sip: $(SITEPKGPREFIX)/sip.so
$(SITEPKGPREFIX)/sip.so: $(SRCDIR)/$(SIPVERSION).tar.gz $(PYTHONPREFIX)/bin/python
mkdir -p "$(TMPDIR)" && cd "$(TMPDIR)" && \
rm -fr "$(SIPVERSION)" && \
tar -zxf "$(SRCDIR)/$(SIPVERSION).tar.gz" && \
cd "$(SIPVERSION)" && \
export PATH="$(PYTHONPREFIX)/bin:$(PATH)" && \
export LD_LIBRARY_PATH="$(PYTHONPREFIX)/lib:$${LD_LIBRARY_PATH}" && \
$(PYTHONPREFIX)/bin/python configure.py && \
$(MAKE) $(MAKE_FLAGS) && \
$(MAKE) -j1 install
wxpython: $(WXPYTHONPREFIX)/bin/pywxrc
$(WXPYTHONPREFIX)/bin/pywxrc: $(SRCDIR)/wxPython-src-$(WXPYTHONVERSION).tar.bz2 $(PYTHONPREFIX)/bin/python $(PNGPREFIX)/lib/libpng.la $(JPEGPREFIX)/lib/libjpeg.la $(ZLIBPREFIX)/lib/libz.a $(TIFFPREFIX)/lib/libtiff.la
mkdir -p "$(TMPDIR)" && cd "$(TMPDIR)" && \
rm -fr "wxPython-src-$(WXPYTHONVERSION)" && \
tar -xjf "$(SRCDIR)/wxPython-src-$(WXPYTHONVERSION).tar.bz2" && \
rm -fr "wxPython-src-$(WXPYTHONVERSION)-$(HOSTTYPE)" && \
mkdir "wxPython-src-$(WXPYTHONVERSION)-$(HOSTTYPE)" && \
cd "wxPython-src-$(WXPYTHONVERSION)-$(HOSTTYPE)" && \
export PATH="$(PYTHONPREFIX)/bin:$(PATH)" && \
export LD_LIBRARY_PATH="$(PYTHONPREFIX)/lib:$${LD_LIBRARY_PATH}" && \
export CPPFLAGS="-I$(PNGPREFIX)/include -I$(JPEGPREFIX)/include -I$(TIFFPREFIX)/include -I$(ZLIBPREFIX)/include -I$(SQLITEPREFIX)/include $${CPPFLAGS}" && \
export LDFLAGS="-L$(PNGPREFIX)/lib -L$(JPEGPREFIX)/lib -L$(TIFFPREFIX)/lib -L$(ZLIBPREFIX)/lib -L$(SQLITEPREFIX)/lib $${LDFLAGS}" && \
export LD_LIBRARY_PATH="$(PNGPREFIX)/lib:$(JPEGPREFIX)/lib:$(TIFFPREFIX)/lib:$(ZLIBPREFIX)/lib:$(SQLITEPREFIX)/lib:$${LD_LIBRARY_PATH}" && \
if test -f "$(GTKPREFIX)/lib/libgtk-x11-2.0.la" ; then \
export CPPFLAGS="-I$(GTKPREFIX)/include $${CPPFLAGS}" && \
export LDFLAGS="-L$(GTKPREFIX)/lib $${LDFLAGS}" && \
export LD_LIBRARY_PATH="$(GTKPREFIX)/lib:$${LD_LIBRARY_PATH}" ; \
fi && \
if test -d "$(GLIBPREFIX)/lib/pkgconfig" ; then \
export PKG_CONFIG_PATH="$(GLIBPREFIX)/lib/pkgconfig:$${PKG_CONFIG_PATH}" ; \
fi && \
"../wxPython-src-$(WXPYTHONVERSION)/configure" \
--prefix="$(WXPYTHONPREFIX)" \
$(WXPYTHONTOOLKIT_$(WXUSEGTK)) \
$(WXFLAGS) && \
$(MAKE) $(MAKE_FLAGS) && \
$(MAKE) $(MAKE_FLAGS) -C contrib/src/gizmos && \
$(MAKE) $(MAKE_FLAGS) -C contrib/src/stc && \
$(MAKE) -j1 install && \
$(MAKE) -j1 install -C contrib/src/gizmos && \
$(MAKE) -j1 install -C contrib/src/stc && \
cd "../wxPython-src-$(WXPYTHONVERSION)/wxPython/" && \
$(PYTHONPREFIX)/bin/python setup.py build_ext --inplace && \
$(PYTHONPREFIX)/bin/python setup.py install
nose: $(SITEPKGPREFIX)/$(PYTHONNOSEVERSION)-py$(PYVERSION).egg
$(SITEPKGPREFIX)/$(PYTHONNOSEVERSION)-py$(PYVERSION).egg: $(SRCDIR)/$(PYTHONNOSEVERSION).tar.gz $(PYTHONPREFIX)/bin/python
mkdir -p "$(TMPDIR)" && cd "$(TMPDIR)" && \
rm -fr "$(PYTHONNOSEVERSION)" && \
tar -xzf "$(SRCDIR)/$(PYTHONNOSEVERSION).tar.gz" && \
cd "$(PYTHONNOSEVERSION)" && \
export PATH="$(PYTHONPREFIX)/bin:$(PATH)" && \
export LD_LIBRARY_PATH="$(PYTHONPREFIX)/lib:$${LD_LIBRARY_PATH}" && \
$(PYTHONPREFIX)/bin/python setup.py install
pil: $(PYTHONPREFIX)/bin/pilfile.py
$(PYTHONPREFIX)/bin/pilfile.py: $(SRCDIR)/$(PILVERSION).tar.gz $(PYTHONPREFIX)/bin/python $(JPEGPREFIX)/lib/libjpeg.la $(ZLIBPREFIX)/lib/libz.a $(TIFFPREFIX)/lib/libtiff.la
mkdir -p "$(TMPDIR)" && cd "$(TMPDIR)" && \
rm -fr "$(PILVERSION)" && \
tar -xzf "$(SRCDIR)/$(PILVERSION).tar.gz" && \
cd "$(PILVERSION)" && \
perl -pi -e 's@(^JPEG_ROOT.*?)=.*@$$1= "$(JPEGPREFIX)"@g' setup.py && \
perl -pi -e 's@(^ZLIB_ROOT.*?)=.*@$$1= "$(ZLIBPREFIX)"@g' setup.py && \
perl -pi -e 's@(^TIFF_ROOT.*?)=.*@$$1= "$(TIFFPREFIX)"@g' setup.py && \
export PATH="$(PYTHONPREFIX)/bin:$(PATH)" && \
export LD_LIBRARY_PATH="$(PYTHONPREFIX)/lib:$${LD_LIBRARY_PATH}" && \
$(PYTHONPREFIX)/bin/python setup.py build_ext -i && \
$(PYTHONPREFIX)/bin/python selftest.py && \
$(PYTHONPREFIX)/bin/python setup.py install
jpeg: $(JPEGPREFIX)/lib/libjpeg.la
$(JPEGPREFIX)/lib/libjpeg.la: $(SRCDIR)/jpegsrc.v$(JPEGVERSION).tar.gz
mkdir -p "$(TMPDIR)" && cd "$(TMPDIR)" && \
rm -fr "jpeg-$(JPEGVERSION)" && \
tar -xzf "$(SRCDIR)/jpegsrc.v$(JPEGVERSION).tar.gz" && \
cd "jpeg-$(JPEGVERSION)" && \
./configure \
CC="gcc" CPP="cpp" \
--prefix="$(JPEGPREFIX)" && \
$(MAKE) $(MAKE_FLAGS) && \
$(MAKE) -j1 install
zlib: $(ZLIBPREFIX)/lib/libz.a
$(ZLIBPREFIX)/lib/libz.a: $(SRCDIR)/$(ZLIBVERSION).tar.bz2
mkdir -p "$(TMPDIR)" && cd "$(TMPDIR)" && \
rm -fr "$(ZLIBVERSION)" && \
tar -xjf "$(SRCDIR)/$(ZLIBVERSION).tar.bz2" && \
cd "$(ZLIBVERSION)" && \
./configure \
--prefix="$(ZLIBPREFIX)" && \
$(MAKE) $(MAKE_FLAGS) && \
$(MAKE) -j1 install && \
if ! test -r "$(ZLIBPREFIX)/include/zlib.h" ; then \
echo "error finding zlib.h" && \
exit 1 ; \
fi
png: $(PNGPREFIX)/lib/libpng.la
$(PNGPREFIX)/lib/libpng.la: $(SRCDIR)/$(PNGVERSION).tar.bz2
mkdir -p "$(TMPDIR)" && cd "$(TMPDIR)" && \
rm -fr "$(PNGVERSION)" && \
tar -xjf "$(SRCDIR)/$(PNGVERSION).tar.bz2" && \
cd "$(PNGVERSION)" && \
./configure \
--prefix="$(PNGPREFIX)" && \
$(MAKE) $(MAKE_FLAGS) && \
$(MAKE) -j1 install
tiff: $(TIFFPREFIX)/lib/libtiff.la
$(TIFFPREFIX)/lib/libtiff.la: $(SRCDIR)/$(TIFFVERSION).tar.gz $(ZLIBPREFIX)/lib/libz.a $(JPEGPREFIX)/lib/libjpeg.la
mkdir -p "$(TMPDIR)" && cd "$(TMPDIR)" && \
rm -fr "$(TIFFVERSION)" && \
tar -xzf "$(SRCDIR)/$(TIFFVERSION).tar.gz" && \
cd "$(TIFFVERSION)" && \
./configure \
--prefix="$(TIFFPREFIX)" \
--enable-cxx \
--with-zlib-include-dir="$(ZLIBPREFIX)/include" \
--with-zlib-lib-dir="$(ZLIBPREFIX)/lib" \
--with-jpeg-include-dir="$(JPEGPREFIX)/include" \
--with-jpeg-lib-dir="$(JPEGPREFIX)/lib" && \
$(MAKE) $(MAKE_FLAGS) && \
$(MAKE) -j1 install
hdf5: $(HDF5PREFIX)/lib/libhdf5.la
$(HDF5PREFIX)/lib/libhdf5.la: $(SRCDIR)/$(HDF5VERSION).tar.bz2 $(ZLIBPREFIX)/lib/libz.a
mkdir -p "$(TMPDIR)" && cd "$(TMPDIR)" && \
rm -fr "$(HDF5VERSION)" && \
tar -xjf "$(SRCDIR)/$(HDF5VERSION).tar.bz2" && \
cd "$(HDF5VERSION)" && \
./configure \
--prefix="$(HDF5PREFIX)" \
--with-pic \
--enable-hl \
--enable-cxx \
--enable-fortran \
--enable-production \
--with-zlib="$(ZLIBPREFIX)" && \
$(MAKE) $(MAKE_FLAGS) && \
$(MAKE) -j1 install
h5py: $(SITEPKGPREFIX)/$(H5PYVERSION)-py$(PYVERSION)-linux-x86_64.egg
$(SITEPKGPREFIX)/$(H5PYVERSION)-py$(PYVERSION)-linux-x86_64.egg: $(SRCDIR)/$(H5PYVERSION).tar.gz $(HDF5PREFIX)/lib/libhdf5.la $(NUMPYPREFIX)/lib/python$(PYVERSION)/site-packages/$(NUMPYVERSION)-py$(PYVERSION).egg-info
mkdir -p "$(TMPDIR)" && cd "$(TMPDIR)" && \
rm -fr "$(H5PYVERSION)" && \
tar -xzf "$(SRCDIR)/$(H5PYVERSION).tar.gz" && \
cd "$(H5PYVERSION)" && \
export PATH="$(PYTHONPREFIX)/bin:$(PATH)" && \
export LD_LIBRARY_PATH="$(PYTHONPREFIX)/lib:$${LD_LIBRARY_PATH}" && \
$(PYTHONPREFIX)/bin/python setup.py build \
--hdf5="$(HDF5PREFIX)" && \
$(PYTHONPREFIX)/bin/python setup.py install
boost: $(BOOSTPREFIX)/lib/libboost_python.so
$(BOOSTPREFIX)/lib/libboost_python.so: $(SRCDIR)/$(BOOSTVERSION).tar.bz2 $(PYTHONPREFIX)/bin/python
mkdir -p "$(TMPDIR)" && cd "$(TMPDIR)" && \
rm -fr "$(BOOSTVERSION)" && \
tar -xjf "$(SRCDIR)/$(BOOSTVERSION).tar.bz2" && \
cd "$(BOOSTVERSION)" && \
export PATH="$(PYTHONPREFIX)/bin:$(PATH)" && \
export LD_LIBRARY_PATH="$(PYTHONPREFIX)/lib:$${LD_LIBRARY_PATH}" && \
./bootstrap.sh \
--prefix="$(BOOSTPREFIX)" \
--with-python-root="$(PYTHONPREFIX)" \
--with-libraries="python" && \
./bjam install
vigra: $(SITEPKGPREFIX)/vigra/vigranumpycore.so
$(SITEPKGPREFIX)/vigra/vigranumpycore.so: $(PYTHONPREFIX)/bin/python $(SRCDIR)/$(VIGRAVERSION)-src.tar.gz $(NUMPYPREFIX)/lib/python$(PYVERSION)/site-packages/$(NUMPYVERSION)-py$(PYVERSION).egg-info $(FFTWPREFIX)/lib/libfftw3f.la $(HDF5PREFIX)/lib/libhdf5.la $(PNGPREFIX)/lib/libpng.la $(TIFFPREFIX)/lib/libtiff.la $(JPEGPREFIX)/lib/libjpeg.la $(BOOSTPREFIX)/lib/libboost_python.so
mkdir -p "$(TMPDIR)" && cd "$(TMPDIR)" && \
rm -fr "$(VIGRAVERSION)" && \
tar -zxf "$(SRCDIR)/$(VIGRAVERSION)-src.tar.gz" && \
cd "$(VIGRAVERSION)" && \
export PATH="$(PYTHONPREFIX)/bin:$(PATH)" && \
export LD_LIBRARY_PATH="$(PYTHONPREFIX)/lib:$${LD_LIBRARY_PATH}" && \
cmake \
-DCMAKE_INSTALL_PREFIX="$(VIGRAPREFIX)" \
-DPYTHON_EXECUTABLE="$(PYTHONPREFIX)/bin/python" \
-DPYTHON_LIBRARY="$(PYTHONPREFIX)/lib/libpython$(PYVERSION).so" \
-DCMAKE_PREFIX_PATH="$(PYTHONPREFIX)" \
-DDEPENDENCY_SEARCH_PREFIX="$(HDF5PREFIX);$(FFTWPREFIX);$(PNGPREFIX);$(TIFFPREFIX);$(JPEGPREFIX)" && \
$(MAKE) && \
$(MAKE) install
# $(MAKE) check && \
#
ilastik-v$(ILASTIKVERSION).tar.gz:
wget $(WGETFLAGS) --output-document="$@" "$(ILASTIKURL)"
ilastik: $(SITEPKGPREFIX)/ilastik-v$(ILASTIKMAJVERSION)-py$(PYVERSION).egg
$(SITEPKGPREFIX)/ilastik-$(ILASTIKMAJVERSION)-py$(PYVERSION).egg: ilastik-v$(ILASTIKVERSION).tar.gz $(SITEPKGPREFIX)/vigra/vigranumpycore.so $(SITEPKGPREFIX)/PyQt4/pyqtconfig.py $(SITEPKGPREFIX)/$(QIMGTOARRVERSION)-py$(PYVERSION).egg-info
mkdir -p "$(TMPDIR)" && cd "$(TMPDIR)" && \
rm -fr "ilastik-v$(ILASTIKVERSION)" && \
tar -xzf "$(SRCDIR)/ilastik-v$(ILASTIKVERSION).tar.gz" && \
cd "$(TMPDIR)/ilastik-ilastik-0_5_05a" && \
export PATH="$(PYTHONPREFIX)/bin:$(PATH)" && \
export LD_LIBRARY_PATH="$(PYTHONPREFIX)/lib:$${LD_LIBRARY_PATH}" && \
$(PYTHONPREFIX)/bin/python setup.py build && \
$(PYTHONPREFIX)/bin/python setup.py install
# git clone "git://gitorious.org/ilastik/ilastik.git" "ilastik-$(ILASTIKMAJVERSION)" && \
# cd "ilastik-$(ILASTIKMAJVERSION)" && \
# git checkout "v$(ILASTIKVERSION)" && \
# export PATH="$(PYTHONPREFIX)/bin:$(PATH)" && \
# export LD_LIBRARY_PATH="$(PYTHONPREFIX)/lib:$${LD_LIBRARY_PATH}" && \
# $(PYTHONPREFIX)/bin/python setup.py build && \
# $(PYTHONPREFIX)/bin/python setup.py install
qimgtoarr: $(SITEPKGPREFIX)/$(QIMGTOARRVERSION)-py$(PYVERSION).egg-info
$(SITEPKGPREFIX)/$(QIMGTOARRVERSION)-py$(PYVERSION).egg-info: $(SRCDIR)/$(QIMGTOARRVERSION).tar.gz $(NUMPYPREFIX)/lib/python$(PYVERSION)/site-packages/$(NUMPYVERSION)-py$(PYVERSION).egg-info $(SITEPKGPREFIX)/PyQt4/pyqtconfig.py
mkdir -p "$(TMPDIR)" && cd "$(TMPDIR)" && \
rm -fr "$(QIMGTOARRVERSION)" && \
tar -xzf "$(SRCDIR)/$(QIMGTOARRVERSION).tar.gz" && \
cd "$(QIMGTOARRVERSION)" && \
export PATH="$(PYTHONPREFIX)/bin:$(PATH)" && \
export LD_LIBRARY_PATH="$(PYTHONPREFIX)/lib:$${LD_LIBRARY_PATH}" && \
$(PYTHONPREFIX)/bin/python setup.py build && \
$(PYTHONPREFIX)/bin/python setup.py install
cp2: cellprofiler
cellprofiler: $(CELLPROFILERPREFIX)/CellProfiler/CellProfiler.py
$(CELLPROFILERPREFIX)/CellProfiler/CellProfiler.py: $(CYTHONPREFIX)/bin/cython $(WXPYTHONPREFIX)/bin/pywxrc $(SITEPKGPREFIX)/$(H5PYVERSION)-py$(PYVERSION)-linux-x86_64.egg $(SCIPYPREFIX)/lib/python$(PYVERSION)/site-packages/$(SCIPYVERSION)-py$(PYVERSION).egg-info $(SITEPKGPREFIX)/vigra/vigranumpycore.so $(SITEPKGPREFIX)/ilastik-$(ILASTIKMAJVERSION)-py$(PYVERSION).egg $(SITEPKGPREFIX)/$(MATPLOTLIBVERSION)-py$(PYVERSION).egg-info $(SITEPKGPREFIX)/$(DECORATORVERSION)-py$(PYVERSION).egg $(PYPIPREFIX)/bin/easy_install $(SITEPKGPREFIX)/MySQL_python-$(MYSQLPYTHONVERSION)-py$(PYVERSION)-linux-x86_64.egg $(PYSQLITEPREFIX)/lib/python$(PYVERSION)/site-packages/$(PYSQLITEVERSION)-py$(PYVERSION).egg-info $(SITEPKGPREFIX)/$(PYTHONNOSEVERSION)-py$(PYVERSION).egg $(PYTHONPREFIX)/bin/pilfile.py
mkdir -p "$(CELLPROFILERPREFIX)" && \