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setup.py
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setup.py
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from setuptools import setup
from setuptools.command.test import test as TestCommand
from fluff.config import FL_VERSION
import sys
class PyTest(TestCommand):
def finalize_options(self):
TestCommand.finalize_options(self)
self.test_args = []
self.test_suite = True
def run_tests(self):
#import here, cause outside the eggs aren't loaded
import pytest
errno = pytest.main(self.test_args)
sys.exit(errno)
def readme():
with open('README.md') as f:
return f.read()
DESCRIPTION = "fluff : exploratory analysis and visualization of high-throughput sequencing data"
setup(name='biofluff',
version=FL_VERSION,
description=DESCRIPTION,
long_description=readme(),
long_description_content_type='text/markdown',
author='Simon van Heeringen',
author_email='simon.vanheeringen@gmail.com',
url = 'https://github.com/simonvh/fluff/',
license='MIT',
packages=[
'fluff',
'fluff/commands'
],
entry_points={'console_scripts': ['fluff = fluff.parse:main'],},
data_files=[],
install_requires=["pysam",
"HTSeq",
"numpy",
"scipy",
"scikit-learn",
"matplotlib",
"palettable",
"pybedtools",
"pyBigWig",
],
setup_requires=['setuptools>=38.6.0'],
tests_require=['pytest'],
cmdclass = {'test': PyTest},
classifiers=[
'Development Status :: 4 - Beta',
'Intended Audience :: Science/Research',
'License :: OSI Approved :: MIT License',
'Operating System :: MacOS :: MacOS X',
'Operating System :: POSIX :: Linux',
'Programming Language :: Python :: 3.6',
'Programming Language :: Python :: 3.7',
'Programming Language :: Python :: 3 :: Only',
'Topic :: Scientific/Engineering :: Bio-Informatics',
],
)