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Replace use of refine_tree_xyz in DCIP tutorials #1381

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merged 2 commits into from
Apr 25, 2024
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Summary

Replace the use of refine_tree_xyz in DC-IP tutorials for their corresponding counterpart methods of discretize meshes: refine_bounding_box, refine_points and refine_surface.

PR Checklist

  • If this is a work in progress PR, set as a Draft PR
  • Linted my code according to the style guides.
  • Added tests to verify changes to the code.
  • Added necessary documentation to any new functions/classes following the
    expect style.
  • Marked as ready for review (if this is was a draft PR), and converted
    to a Pull Request
  • Tagged @simpeg/simpeg-developers when ready for review.

Reference issue

Fixes #1379

What does this implement/fix?

Additional information

Replace the use of `refine_tree_xyz` in DC-IP tutorials for their
corresponding counterpart methods of discretize meshes:
`refine_bounding_box`, `refine_points` and `refine_surface`.
@santisoler
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With these changes, I could run the tutorials locally without errors. @dccowan could you take a look at this?

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codecov bot commented Mar 14, 2024

Codecov Report

All modified and coverable lines are covered by tests ✅

Project coverage is 82.54%. Comparing base (fbd92e5) to head (e7d5e7d).

Additional details and impacted files
@@           Coverage Diff           @@
##             main    #1381   +/-   ##
=======================================
  Coverage   82.54%   82.54%           
=======================================
  Files         167      167           
  Lines       25700    25700           
=======================================
  Hits        21214    21214           
  Misses       4486     4486           

☔ View full report in Codecov by Sentry.
📢 Have feedback on the report? Share it here.

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These look good to me

@santisoler santisoler merged commit b85f758 into main Apr 25, 2024
18 checks passed
@santisoler santisoler deleted the fix-bug-refine-tree branch April 25, 2024 19:03
thibaut-kobold added a commit to KoBoldMetals/simpeg that referenced this pull request May 8, 2024
…e_simpeg_021

* commit 'fe444e2d714ab1a3f1541575a9f8c4ad1e74894b': (73 commits)
  Fix distance calculation in `convert_survey_3d_to_2d_lines` (simpeg#1390)
  Rename spontaneous potential to self potential (simpeg#1422)
  Lowercase simpeg for generating coverage on Azure (simpeg#1443)
  Replace SimPEG for simpeg across docstrings (simpeg#1438)
  Update copyright year in __init__.py (simpeg#1436)
  Move to a PEP8 compliant package name. (simpeg#1430)
  Fix rst syntax in release notes for v0.21.0 (simpeg#1434)
  Replace use of `refine_tree_xyz` in DCIP tutorials (simpeg#1381)
  Add new Issue template for making a release (simpeg#1410)
  Safely run reviewdog on `pull_request_target` events (simpeg#1427)
  Use reviewdog to annotate PR's with black and flake8 errors. (simpeg#1424)
  Remove the parameters argument from docstring (simpeg#1417)
  Add release notes for v0.21.1 (simpeg#1416)
  Fix hard dask dependency (simpeg#1415)
  Publish documentation on azure (simpeg#1412)
  Add release notes for SimPEG v0.21 (simpeg#1409)
  Bump Black version to 24.3.0 (simpeg#1403)
  Remove link to "twitter" (simpeg#1406)
  Add Ying and Williams to AUTHORS.rst (simpeg#1405)
  Dask MetaSim (simpeg#1199)
  ...

# Conflicts:
#	simpeg/electromagnetics/base_1d_stitched.py
#	simpeg/electromagnetics/frequency_domain/simulation_1d_stitched.py
#	simpeg/electromagnetics/time_domain/receivers.py
#	simpeg/electromagnetics/time_domain/simulation_1d_stitched.py
#	simpeg/electromagnetics/utils/em1d_utils.py
#	simpeg/potential_fields/magnetics/_numba_functions.py
#	simpeg/regularization/laterally_constrained.py
#	simpeg/regularization/regularization_mesh_lateral.py
#	simpeg/regularization/rotated.py
#	simpeg/utils/__init__.py
#	simpeg/utils/model_utils.py
#	tests/base/regularizations/test_full_gradient.py
#	tests/base/regularizations/test_regularization.py
#	tests/base/test_mass_matrices.py
#	tests/base/test_model_utils.py
#	tests/base/test_utils.py
#	tests/em/fdem/inverse/adjoint/test_FDEM_adjointEB.py
#	tests/em/fdem/inverse/derivs/test_FDEM_derivs.py
#	tests/pf/test_forward_Mag_Linear.py
thibaut-kobold added a commit to KoBoldMetals/simpeg that referenced this pull request May 8, 2024
…al_update_21_release

* commit '07aeb65de865cd9df55e2d51ca840ea9d60f2234': (67 commits)
  Fix rst syntax in release notes for v0.21.0 (simpeg#1434)
  Replace use of `refine_tree_xyz` in DCIP tutorials (simpeg#1381)
  Add new Issue template for making a release (simpeg#1410)
  Safely run reviewdog on `pull_request_target` events (simpeg#1427)
  Use reviewdog to annotate PR's with black and flake8 errors. (simpeg#1424)
  Remove the parameters argument from docstring (simpeg#1417)
  Add release notes for v0.21.1 (simpeg#1416)
  Fix hard dask dependency (simpeg#1415)
  Publish documentation on azure (simpeg#1412)
  Add release notes for SimPEG v0.21 (simpeg#1409)
  Bump Black version to 24.3.0 (simpeg#1403)
  Remove link to "twitter" (simpeg#1406)
  Add Ying and Williams to AUTHORS.rst (simpeg#1405)
  Dask MetaSim (simpeg#1199)
  Update year in LICENSE (simpeg#1404)
  Update AUTHORS.rst (simpeg#1259)
  Minor adjustments to Sphinx configuration (simpeg#1398)
  Enforce regularization `weights` as dictionaries (simpeg#1344)
  Improve documentation for base simulation classes (simpeg#1295)
  Add link to User Tutorials to navbar in docs (simpeg#1401)
  ...

# Conflicts:
#	SimPEG/electromagnetics/time_domain/receivers.py
#	SimPEG/utils/__init__.py
#	SimPEG/utils/model_utils.py
#	tests/base/regularizations/test_full_gradient.py
#	tests/base/regularizations/test_regularization.py
#	tests/base/test_model_utils.py
#	tests/base/test_utils.py
#	tests/pf/test_forward_Mag_Linear.py
thibaut-kobold added a commit to thibaut-kobold/simpeg that referenced this pull request May 9, 2024
…ting_strategy

* commit 'fe444e2d714ab1a3f1541575a9f8c4ad1e74894b': (86 commits)
  Fix distance calculation in `convert_survey_3d_to_2d_lines` (simpeg#1390)
  Rename spontaneous potential to self potential (simpeg#1422)
  Lowercase simpeg for generating coverage on Azure (simpeg#1443)
  Replace SimPEG for simpeg across docstrings (simpeg#1438)
  Update copyright year in __init__.py (simpeg#1436)
  Move to a PEP8 compliant package name. (simpeg#1430)
  Fix rst syntax in release notes for v0.21.0 (simpeg#1434)
  Replace use of `refine_tree_xyz` in DCIP tutorials (simpeg#1381)
  Add new Issue template for making a release (simpeg#1410)
  Safely run reviewdog on `pull_request_target` events (simpeg#1427)
  Use reviewdog to annotate PR's with black and flake8 errors. (simpeg#1424)
  Remove the parameters argument from docstring (simpeg#1417)
  Add release notes for v0.21.1 (simpeg#1416)
  Fix hard dask dependency (simpeg#1415)
  Publish documentation on azure (simpeg#1412)
  Add release notes for SimPEG v0.21 (simpeg#1409)
  Bump Black version to 24.3.0 (simpeg#1403)
  Remove link to "twitter" (simpeg#1406)
  Add Ying and Williams to AUTHORS.rst (simpeg#1405)
  Dask MetaSim (simpeg#1199)
  ...

# Conflicts:
#	simpeg/utils/__init__.py
#	simpeg/utils/model_utils.py
#	tests/base/test_model_utils.py
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BUG: Some tutorials are failing when trying to build the docs
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