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Merge pull request #60 from singularityhub/containers/update-2022-11-18
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[bot] containers/update-2022-11-18
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@vsoch
vsoch committed Nov 19, 2022
2 parents 21081ec + 906faa7 commit 174de0b
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4 changes: 3 additions & 1 deletion ghcr.io/autamus/amrex/container.yaml
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Expand Up @@ -4,7 +4,7 @@ maintainer: '@vsoch'
description: AMReX is a publicly available software framework designed for building
massively parallel block- structured adaptive mesh refinement (AMR) applications.
latest:
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Expand All @@ -13,3 +13,5 @@ tags:
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6 changes: 3 additions & 3 deletions ghcr.io/autamus/angsd/container.yaml
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Expand Up @@ -3,9 +3,9 @@ url: https://github.com/orgs/autamus/packages/container/package/angsd
maintainer: '@vsoch'
description: ANGSD is a software for analyzing next generation sequencing data.
latest:
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latest: sha256:338f13839b99de50694e13e59f3b067e672ca559fff5832eb1f47f16e355ba34
aliases:
angsd: /opt/view/bin/angsd
5 changes: 3 additions & 2 deletions ghcr.io/autamus/cdo/container.yaml
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Expand Up @@ -4,11 +4,12 @@ maintainer: '@vsoch'
description: CDO is a collection of command line Operators to manipulate and analyse
Climate and NWP model Data.
latest:
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aliases:
cdo: /opt/view/bin/cdo
6 changes: 3 additions & 3 deletions ghcr.io/autamus/circos/container.yaml
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Expand Up @@ -3,9 +3,9 @@ url: https://github.com/orgs/autamus/packages/container/package/circos
maintainer: '@vsoch'
description: Circos is a software package for visualizing data and information.
latest:
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aliases:
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5 changes: 3 additions & 2 deletions ghcr.io/autamus/proj/container.yaml
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Expand Up @@ -4,11 +4,12 @@ maintainer: '@vsoch'
description: PROJ is a generic coordinate transformation software, that transforms
coordinates from one coordinate reference system (CRS) to another.
latest:
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aliases:
proj: /opt/view/bin/proj
projinfo: /opt/view/bin/projinfo
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4 changes: 3 additions & 1 deletion quay.io/biocontainers/bioconductor-amaretto/container.yaml
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Expand Up @@ -2,9 +2,11 @@ url: https://biocontainers.pro/tools/bioconductor-amaretto
maintainer: '@vsoch'
description: shpc-registry automated BioContainers addition for bioconductor-amaretto
latest:
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docker: quay.io/biocontainers/bioconductor-amaretto
aliases:
pandoc: /usr/local/bin/pandoc
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3 changes: 2 additions & 1 deletion quay.io/biocontainers/bioconductor-aneufinder/container.yaml
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Expand Up @@ -2,9 +2,10 @@ url: https://biocontainers.pro/tools/bioconductor-aneufinder
maintainer: '@vsoch'
description: shpc-registry automated BioContainers addition for bioconductor-aneufinder
latest:
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docker: quay.io/biocontainers/bioconductor-aneufinder
aliases:
.bioconductor-aneufinderdata-post-link.sh: /usr/local/bin/.bioconductor-aneufinderdata-post-link.sh
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3 changes: 2 additions & 1 deletion quay.io/biocontainers/bioconductor-annotationtools/container.yaml
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Expand Up @@ -2,7 +2,8 @@ url: https://biocontainers.pro/tools/bioconductor-annotationtools
maintainer: '@vsoch'
description: shpc-registry automated BioContainers addition for bioconductor-annotationtools
latest:
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docker: quay.io/biocontainers/bioconductor-annotationtools
3 changes: 2 additions & 1 deletion quay.io/biocontainers/bioconductor-aseb/container.yaml
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Expand Up @@ -2,7 +2,8 @@ url: https://biocontainers.pro/tools/bioconductor-aseb
maintainer: '@vsoch'
description: shpc-registry automated BioContainers addition for bioconductor-aseb
latest:
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docker: quay.io/biocontainers/bioconductor-aseb
5 changes: 4 additions & 1 deletion quay.io/biocontainers/bioconductor-assessorfdata/container.yaml
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Expand Up @@ -2,9 +2,12 @@ url: https://biocontainers.pro/tools/bioconductor-assessorfdata
maintainer: '@vsoch'
description: shpc-registry automated BioContainers addition for bioconductor-assessorfdata
latest:
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docker: quay.io/biocontainers/bioconductor-assessorfdata
aliases:
.bioconductor-assessorfdata-post-link.sh: /usr/local/bin/.bioconductor-assessorfdata-post-link.sh
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3 changes: 2 additions & 1 deletion quay.io/biocontainers/bioconductor-bac/container.yaml
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Expand Up @@ -2,7 +2,8 @@ url: https://biocontainers.pro/tools/bioconductor-bac
maintainer: '@vsoch'
description: shpc-registry automated BioContainers addition for bioconductor-bac
latest:
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docker: quay.io/biocontainers/bioconductor-bac
3 changes: 2 additions & 1 deletion quay.io/biocontainers/bioconductor-bhc/container.yaml
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Expand Up @@ -2,7 +2,8 @@ url: https://biocontainers.pro/tools/bioconductor-bhc
maintainer: '@vsoch'
description: shpc-registry automated BioContainers addition for bioconductor-bhc
latest:
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docker: quay.io/biocontainers/bioconductor-bhc
7 changes: 6 additions & 1 deletion quay.io/biocontainers/bioconductor-bigmelon/container.yaml
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Expand Up @@ -2,9 +2,14 @@ url: https://biocontainers.pro/tools/bioconductor-bigmelon
maintainer: '@vsoch'
description: shpc-registry automated BioContainers addition for bioconductor-bigmelon
latest:
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docker: quay.io/biocontainers/bioconductor-bigmelon
aliases:
wget: /usr/local/bin/wget
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7 changes: 6 additions & 1 deletion quay.io/biocontainers/bioconductor-biocstyle/container.yaml
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Expand Up @@ -2,9 +2,14 @@ url: https://biocontainers.pro/tools/bioconductor-biocstyle
maintainer: '@vsoch'
description: shpc-registry automated BioContainers addition for bioconductor-biocstyle
latest:
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docker: quay.io/biocontainers/bioconductor-biocstyle
aliases:
pandoc-citeproc: /usr/local/bin/pandoc-citeproc
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3 changes: 2 additions & 1 deletion quay.io/biocontainers/bioconductor-brendadb/container.yaml
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Expand Up @@ -2,7 +2,8 @@ url: https://biocontainers.pro/tools/bioconductor-brendadb
maintainer: '@vsoch'
description: shpc-registry automated BioContainers addition for bioconductor-brendadb
latest:
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tags:
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docker: quay.io/biocontainers/bioconductor-brendadb
3 changes: 2 additions & 1 deletion quay.io/biocontainers/bioconductor-category/container.yaml
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Expand Up @@ -2,7 +2,8 @@ url: https://biocontainers.pro/tools/bioconductor-category
maintainer: '@vsoch'
description: shpc-registry automated BioContainers addition for bioconductor-category
latest:
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tags:
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docker: quay.io/biocontainers/bioconductor-category
3 changes: 2 additions & 1 deletion quay.io/biocontainers/bioconductor-cetf/container.yaml
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Expand Up @@ -2,9 +2,10 @@ url: https://biocontainers.pro/tools/bioconductor-cetf
maintainer: '@vsoch'
description: shpc-registry automated BioContainers addition for bioconductor-cetf
latest:
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tags:
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docker: quay.io/biocontainers/bioconductor-cetf
aliases:
Cytoscape: /usr/local/bin/Cytoscape
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3 changes: 2 additions & 1 deletion quay.io/biocontainers/bioconductor-cfassay/container.yaml
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Expand Up @@ -2,7 +2,8 @@ url: https://biocontainers.pro/tools/bioconductor-cfassay
maintainer: '@vsoch'
description: shpc-registry automated BioContainers addition for bioconductor-cfassay
latest:
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tags:
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1.32.0--r42hdfd78af_0: sha256:fd66d3f8319935aeab98082dfb54ae8e1ee203c85e2afc4f454d4c8ff7eef142
docker: quay.io/biocontainers/bioconductor-cfassay
3 changes: 2 additions & 1 deletion quay.io/biocontainers/bioconductor-chipseqr/container.yaml
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Expand Up @@ -2,7 +2,8 @@ url: https://biocontainers.pro/tools/bioconductor-chipseqr
maintainer: '@vsoch'
description: shpc-registry automated BioContainers addition for bioconductor-chipseqr
latest:
1.48.0--r41hc0cfd56_2: sha256:86cf9673db70cfc6758f9e99a1f3b85773b450360ea2da0e647971b73393e0b1
1.52.0--r42hc0cfd56_0: sha256:93c4896a67d868ffa21ca9b93b93d040dc0aec0590d33f6bd78e684984f61c9b
tags:
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1.52.0--r42hc0cfd56_0: sha256:93c4896a67d868ffa21ca9b93b93d040dc0aec0590d33f6bd78e684984f61c9b
docker: quay.io/biocontainers/bioconductor-chipseqr
4 changes: 3 additions & 1 deletion quay.io/biocontainers/bioconductor-cnvranger/container.yaml
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Expand Up @@ -2,9 +2,11 @@ url: https://biocontainers.pro/tools/bioconductor-cnvranger
maintainer: '@vsoch'
description: shpc-registry automated BioContainers addition for bioconductor-cnvranger
latest:
1.8.0--r41hdfd78af_0: sha256:cfb424da9abb5eadd1548300b1e32adf979cc6edd6f746664a4936cf7f508910
1.14.0--r42hdfd78af_0: sha256:b654516ae818115f05f4499265c5917992aff12d0da95029d2add1157045f275
tags:
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1.14.0--r42hdfd78af_0: sha256:b654516ae818115f05f4499265c5917992aff12d0da95029d2add1157045f275
1.10.0--r41hdfd78af_0: sha256:178d4e3eac95e42fcc54cad6ecdca3bad724626a360934c28b6b42d368ae1c84
docker: quay.io/biocontainers/bioconductor-cnvranger
aliases:
x86_64-conda-linux-gnu-gfortran.bin: /usr/local/bin/x86_64-conda-linux-gnu-gfortran.bin
3 changes: 2 additions & 1 deletion quay.io/biocontainers/bioconductor-codelink/container.yaml
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Expand Up @@ -2,7 +2,8 @@ url: https://biocontainers.pro/tools/bioconductor-codelink
maintainer: '@vsoch'
description: shpc-registry automated BioContainers addition for bioconductor-codelink
latest:
1.62.0--r41hdfd78af_0: sha256:b4f12167519b0874e9e205216981e965c066cbfa0e9c4ee8a84f3f6124a7e1c9
1.66.0--r42hdfd78af_0: sha256:2769f3144f32d09bef0b9b1daf54089ddc28491733918e64147bdfe648505d29
tags:
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1.66.0--r42hdfd78af_0: sha256:2769f3144f32d09bef0b9b1daf54089ddc28491733918e64147bdfe648505d29
docker: quay.io/biocontainers/bioconductor-codelink
3 changes: 2 additions & 1 deletion quay.io/biocontainers/bioconductor-cohcap/container.yaml
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Expand Up @@ -2,9 +2,10 @@ url: https://biocontainers.pro/tools/bioconductor-cohcap
maintainer: '@vsoch'
description: shpc-registry automated BioContainers addition for bioconductor-cohcap
latest:
1.40.0--pl5321r41hc247a5b_3: sha256:19670a6ce08344aa0a468bd6ed81414dcb0e9bf130942ab7866626993f269a3b
1.44.0--pl5321r42hc247a5b_0: sha256:b46b84dd806fcb7247492a7146352025a8d4e859d7f2fb6e61f073e14cb047e3
tags:
1.40.0--pl5321r41hc247a5b_3: sha256:19670a6ce08344aa0a468bd6ed81414dcb0e9bf130942ab7866626993f269a3b
1.44.0--pl5321r42hc247a5b_0: sha256:b46b84dd806fcb7247492a7146352025a8d4e859d7f2fb6e61f073e14cb047e3
docker: quay.io/biocontainers/bioconductor-cohcap
aliases:
.bioconductor-cohcapanno-post-link.sh: /usr/local/bin/.bioconductor-cohcapanno-post-link.sh
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3 changes: 2 additions & 1 deletion quay.io/biocontainers/bioconductor-consensusclusterplus/container.yaml
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Expand Up @@ -2,7 +2,8 @@ url: https://biocontainers.pro/tools/bioconductor-consensusclusterplus
maintainer: '@vsoch'
description: shpc-registry automated BioContainers addition for bioconductor-consensusclusterplus
latest:
1.58.0--r41hdfd78af_0: sha256:f161e7d7531d74d1995063c4e36b263731df611e2cada2fcd4fea11d7bf2ca5f
1.62.0--r42hdfd78af_0: sha256:acad947a7bbccfdd959d182bfe5c35cdda2d8e2c0f31f94dfd67ac1b28329d58
tags:
1.58.0--r41hdfd78af_0: sha256:f161e7d7531d74d1995063c4e36b263731df611e2cada2fcd4fea11d7bf2ca5f
1.62.0--r42hdfd78af_0: sha256:acad947a7bbccfdd959d182bfe5c35cdda2d8e2c0f31f94dfd67ac1b28329d58
docker: quay.io/biocontainers/bioconductor-consensusclusterplus
3 changes: 2 additions & 1 deletion quay.io/biocontainers/bioconductor-dce/container.yaml
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Expand Up @@ -2,9 +2,10 @@ url: https://biocontainers.pro/tools/bioconductor-dce
maintainer: '@vsoch'
description: shpc-registry automated BioContainers addition for bioconductor-dce
latest:
1.2.0--r41hdfd78af_0: sha256:8e1cb0e1924983286499586059fef38b241b797df2722a67548b25443b4605cf
1.6.0--r42hdfd78af_0: sha256:138ecb06cb6b0c981c1b94f076ee8d6e5481bb58a2c63f05ab875b1a53d3e472
tags:
1.2.0--r41hdfd78af_0: sha256:8e1cb0e1924983286499586059fef38b241b797df2722a67548b25443b4605cf
1.6.0--r42hdfd78af_0: sha256:138ecb06cb6b0c981c1b94f076ee8d6e5481bb58a2c63f05ab875b1a53d3e472
docker: quay.io/biocontainers/bioconductor-dce
aliases:
pandoc: /usr/local/bin/pandoc
3 changes: 2 additions & 1 deletion quay.io/biocontainers/bioconductor-ddct/container.yaml
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Expand Up @@ -2,7 +2,8 @@ url: https://biocontainers.pro/tools/bioconductor-ddct
maintainer: '@vsoch'
description: shpc-registry automated BioContainers addition for bioconductor-ddct
latest:
1.50.0--r41hdfd78af_0: sha256:783b21596d8be4d1aad55aacda5e7db86188939ca2f859c67c4f37abf02f3837
1.54.0--r42hdfd78af_0: sha256:fe333a1947fad8856ef5bf95c7253452a6b6efb110789cf8417f86020d6cdc6c
tags:
1.50.0--r41hdfd78af_0: sha256:783b21596d8be4d1aad55aacda5e7db86188939ca2f859c67c4f37abf02f3837
1.54.0--r42hdfd78af_0: sha256:fe333a1947fad8856ef5bf95c7253452a6b6efb110789cf8417f86020d6cdc6c
docker: quay.io/biocontainers/bioconductor-ddct
3 changes: 2 additions & 1 deletion quay.io/biocontainers/bioconductor-deseq2/container.yaml
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Expand Up @@ -2,7 +2,8 @@ url: https://biocontainers.pro/tools/bioconductor-deseq2
maintainer: '@vsoch'
description: shpc-registry automated BioContainers addition for bioconductor-deseq2
latest:
1.34.0--r41hc247a5b_3: sha256:c06884d353effb957123c0e966554f0690fb6ae1ecce8c02919a1877a82339f4
1.38.0--r42hc247a5b_0: sha256:bfa2b49c155c117a0cb48db177c030d175cdb427b3d111017e2559981f47de01
tags:
1.34.0--r41hc247a5b_3: sha256:c06884d353effb957123c0e966554f0690fb6ae1ecce8c02919a1877a82339f4
1.38.0--r42hc247a5b_0: sha256:bfa2b49c155c117a0cb48db177c030d175cdb427b3d111017e2559981f47de01
docker: quay.io/biocontainers/bioconductor-deseq2
3 changes: 2 additions & 1 deletion quay.io/biocontainers/bioconductor-droplettestfiles/container.yaml
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Expand Up @@ -2,9 +2,10 @@ url: https://biocontainers.pro/tools/bioconductor-droplettestfiles
maintainer: '@vsoch'
description: shpc-registry automated BioContainers addition for bioconductor-droplettestfiles
latest:
1.4.0--r41hdfd78af_1: sha256:36e9970f718ea5b738253b6e6cbd40726eb415b685bb1d484631272f8ca038fd
1.8.0--r42hdfd78af_0: sha256:5819f5de05b608122db6e0e4ffb5efa4b51615d87a6645d57ba7742a69da496f
tags:
1.4.0--r41hdfd78af_1: sha256:36e9970f718ea5b738253b6e6cbd40726eb415b685bb1d484631272f8ca038fd
1.8.0--r42hdfd78af_0: sha256:5819f5de05b608122db6e0e4ffb5efa4b51615d87a6645d57ba7742a69da496f
docker: quay.io/biocontainers/bioconductor-droplettestfiles
aliases:
.bioconductor-droplettestfiles-post-link.sh: /usr/local/bin/.bioconductor-droplettestfiles-post-link.sh
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