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Merge pull request #110 from singularityhub/update/containers-2023-05-15
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[bot] update/containers-2023-05-15
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vsoch committed May 15, 2023
2 parents b298948 + 72332d6 commit 327caac
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68 changes: 68 additions & 0 deletions quay.io/biocontainers/fairease-source/container.yaml
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url: https://biocontainers.pro/tools/fairease-source
maintainer: '@vsoch'
description: singularity registry hpc automated addition for fairease-source
latest:
1.4.1--pyh7cba7a3_0: sha256:3c393d22f743433735142e70fff80a061ca107913da2bdf14f2c20f4dee1af87
tags:
1.4.1--pyh7cba7a3_0: sha256:3c393d22f743433735142e70fff80a061ca107913da2bdf14f2c20f4dee1af87
docker: quay.io/biocontainers/fairease-source
aliases:
create_probes_earth_map.py: /usr/local/bin/create_probes_earth_map.py
csv2kml: /usr/local/bin/csv2kml
data_information_calc.py: /usr/local/bin/data_information_calc.py
depth_aggregator.py: /usr/local/bin/depth_aggregator.py
depth_calc.py: /usr/local/bin/depth_calc.py
duplicated_records_remover.py: /usr/local/bin/duplicated_records_remover.py
find_variable_name.py: /usr/local/bin/find_variable_name.py
insitu_evaluation.py: /usr/local/bin/insitu_evaluation.py
insitu_tac_platforms_finder.py: /usr/local/bin/insitu_tac_platforms_finder.py
insitu_tac_pre_processing.py: /usr/local/bin/insitu_tac_pre_processing.py
insitu_tac_timeseries_extractor.py: /usr/local/bin/insitu_tac_timeseries_extractor.py
kml2pykml: /usr/local/bin/kml2pykml
mean_variance_nc_variable.py: /usr/local/bin/mean_variance_nc_variable.py
metadata_merger.py: /usr/local/bin/metadata_merger.py
model_datasets_concatenator.py: /usr/local/bin/model_datasets_concatenator.py
model_postpro.py: /usr/local/bin/model_postpro.py
nc3tonc4: /usr/local/bin/nc3tonc4
nc4tonc3: /usr/local/bin/nc4tonc3
ncinfo: /usr/local/bin/ncinfo
obs_postpro.py: /usr/local/bin/obs_postpro.py
pointwise_datasets_concatenator.py: /usr/local/bin/pointwise_datasets_concatenator.py
ptmp_to_temp.py: /usr/local/bin/ptmp_to_temp.py
quality_check_applier.py: /usr/local/bin/quality_check_applier.py
real_time_concatenator.py: /usr/local/bin/real_time_concatenator.py
records_monotonicity_fixer.py: /usr/local/bin/records_monotonicity_fixer.py
rejection_statistics.py: /usr/local/bin/rejection_statistics.py
time_averager.py: /usr/local/bin/time_averager.py
time_calc.py: /usr/local/bin/time_calc.py
time_check.py: /usr/local/bin/time_check.py
time_from_index.py: /usr/local/bin/time_from_index.py
time_series_post_processing.py: /usr/local/bin/time_series_post_processing.py
unique_values_nc_variable.py: /usr/local/bin/unique_values_nc_variable.py
validate_kml: /usr/local/bin/validate_kml
vertical_interpolation.py: /usr/local/bin/vertical_interpolation.py
h5delete: /usr/local/bin/h5delete
unidecode: /usr/local/bin/unidecode
tjbench: /usr/local/bin/tjbench
aec: /usr/local/bin/aec
f2py3.11: /usr/local/bin/f2py3.11
zipcmp: /usr/local/bin/zipcmp
zipmerge: /usr/local/bin/zipmerge
ziptool: /usr/local/bin/ziptool
2to3-3.11: /usr/local/bin/2to3-3.11
idle3.11: /usr/local/bin/idle3.11
pydoc3.11: /usr/local/bin/pydoc3.11
python3.11: /usr/local/bin/python3.11
python3.11-config: /usr/local/bin/python3.11-config
gif2hdf: /usr/local/bin/gif2hdf
h4_ncdump: /usr/local/bin/h4_ncdump
h4_ncgen: /usr/local/bin/h4_ncgen
h4cc: /usr/local/bin/h4cc
h4redeploy: /usr/local/bin/h4redeploy
hdf24to8: /usr/local/bin/hdf24to8
hdf2gif: /usr/local/bin/hdf2gif
hdf2jpeg: /usr/local/bin/hdf2jpeg
hdf8to24: /usr/local/bin/hdf8to24
hdfcomp: /usr/local/bin/hdfcomp
hdfed: /usr/local/bin/hdfed
hdfimport: /usr/local/bin/hdfimport
97 changes: 97 additions & 0 deletions quay.io/biocontainers/julia-divand/container.yaml
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url: https://biocontainers.pro/tools/julia-divand
maintainer: '@vsoch'
description: singularity registry hpc automated addition for julia-divand
latest:
2.7.9--h9ee0642_0: sha256:c84319ee092fe784baf42b20e604e5392fb55f8a4c2fed8afad8b0d324a92bfa
tags:
2.7.9--h9ee0642_0: sha256:c84319ee092fe784baf42b20e604e5392fb55f8a4c2fed8afad8b0d324a92bfa
docker: quay.io/biocontainers/julia-divand
aliases:
7z: /usr/local/bin/7z
7za: /usr/local/bin/7za
7zr: /usr/local/bin/7zr
git2_cli: /usr/local/bin/git2_cli
julia: /usr/local/bin/julia
mbedtls_aead_demo: /usr/local/bin/mbedtls_aead_demo
mbedtls_benchmark: /usr/local/bin/mbedtls_benchmark
mbedtls_cert_app: /usr/local/bin/mbedtls_cert_app
mbedtls_cert_req: /usr/local/bin/mbedtls_cert_req
mbedtls_cert_write: /usr/local/bin/mbedtls_cert_write
mbedtls_cipher_aead_demo: /usr/local/bin/mbedtls_cipher_aead_demo
mbedtls_crl_app: /usr/local/bin/mbedtls_crl_app
mbedtls_crypt_and_hash: /usr/local/bin/mbedtls_crypt_and_hash
mbedtls_crypto_examples: /usr/local/bin/mbedtls_crypto_examples
mbedtls_dh_client: /usr/local/bin/mbedtls_dh_client
mbedtls_dh_genprime: /usr/local/bin/mbedtls_dh_genprime
mbedtls_dh_server: /usr/local/bin/mbedtls_dh_server
mbedtls_dtls_client: /usr/local/bin/mbedtls_dtls_client
mbedtls_dtls_server: /usr/local/bin/mbedtls_dtls_server
mbedtls_ecdh_curve25519: /usr/local/bin/mbedtls_ecdh_curve25519
mbedtls_ecdsa: /usr/local/bin/mbedtls_ecdsa
mbedtls_gen_entropy: /usr/local/bin/mbedtls_gen_entropy
mbedtls_gen_key: /usr/local/bin/mbedtls_gen_key
mbedtls_gen_random_ctr_drbg: /usr/local/bin/mbedtls_gen_random_ctr_drbg
mbedtls_generic_sum: /usr/local/bin/mbedtls_generic_sum
mbedtls_hello: /usr/local/bin/mbedtls_hello
mbedtls_hmac_demo: /usr/local/bin/mbedtls_hmac_demo
mbedtls_key_app: /usr/local/bin/mbedtls_key_app
mbedtls_key_app_writer: /usr/local/bin/mbedtls_key_app_writer
mbedtls_key_ladder_demo: /usr/local/bin/mbedtls_key_ladder_demo
mbedtls_key_ladder_demo.sh: /usr/local/bin/mbedtls_key_ladder_demo.sh
mbedtls_load_roots: /usr/local/bin/mbedtls_load_roots
mbedtls_md_hmac_demo: /usr/local/bin/mbedtls_md_hmac_demo
mbedtls_mini_client: /usr/local/bin/mbedtls_mini_client
mbedtls_mpi_demo: /usr/local/bin/mbedtls_mpi_demo
mbedtls_pem2der: /usr/local/bin/mbedtls_pem2der
mbedtls_pk_decrypt: /usr/local/bin/mbedtls_pk_decrypt
mbedtls_pk_encrypt: /usr/local/bin/mbedtls_pk_encrypt
mbedtls_pk_sign: /usr/local/bin/mbedtls_pk_sign
mbedtls_pk_verify: /usr/local/bin/mbedtls_pk_verify
mbedtls_psa_constant_names: /usr/local/bin/mbedtls_psa_constant_names
mbedtls_query_compile_time_config: /usr/local/bin/mbedtls_query_compile_time_config
mbedtls_req_app: /usr/local/bin/mbedtls_req_app
mbedtls_rsa_decrypt: /usr/local/bin/mbedtls_rsa_decrypt
mbedtls_rsa_encrypt: /usr/local/bin/mbedtls_rsa_encrypt
mbedtls_rsa_genkey: /usr/local/bin/mbedtls_rsa_genkey
mbedtls_rsa_sign: /usr/local/bin/mbedtls_rsa_sign
mbedtls_rsa_sign_pss: /usr/local/bin/mbedtls_rsa_sign_pss
mbedtls_rsa_verify: /usr/local/bin/mbedtls_rsa_verify
mbedtls_rsa_verify_pss: /usr/local/bin/mbedtls_rsa_verify_pss
mbedtls_selftest: /usr/local/bin/mbedtls_selftest
mbedtls_ssl_client1: /usr/local/bin/mbedtls_ssl_client1
mbedtls_ssl_client2: /usr/local/bin/mbedtls_ssl_client2
mbedtls_ssl_context_info: /usr/local/bin/mbedtls_ssl_context_info
mbedtls_ssl_fork_server: /usr/local/bin/mbedtls_ssl_fork_server
mbedtls_ssl_mail_client: /usr/local/bin/mbedtls_ssl_mail_client
mbedtls_ssl_pthread_server: /usr/local/bin/mbedtls_ssl_pthread_server
mbedtls_ssl_server: /usr/local/bin/mbedtls_ssl_server
mbedtls_ssl_server2: /usr/local/bin/mbedtls_ssl_server2
mbedtls_strerror: /usr/local/bin/mbedtls_strerror
mbedtls_udp_proxy: /usr/local/bin/mbedtls_udp_proxy
mbedtls_zeroize: /usr/local/bin/mbedtls_zeroize
scalar: /usr/local/bin/scalar
git: /usr/local/bin/git
git-cvsserver: /usr/local/bin/git-cvsserver
git-receive-pack: /usr/local/bin/git-receive-pack
git-shell: /usr/local/bin/git-shell
git-upload-archive: /usr/local/bin/git-upload-archive
git-upload-pack: /usr/local/bin/git-upload-pack
gitk: /usr/local/bin/gitk
hwloc-gather-cpuid: /usr/local/bin/hwloc-gather-cpuid
hwloc-annotate: /usr/local/bin/hwloc-annotate
hwloc-bind: /usr/local/bin/hwloc-bind
hwloc-calc: /usr/local/bin/hwloc-calc
hwloc-compress-dir: /usr/local/bin/hwloc-compress-dir
hwloc-diff: /usr/local/bin/hwloc-diff
hwloc-distrib: /usr/local/bin/hwloc-distrib
hwloc-gather-topology: /usr/local/bin/hwloc-gather-topology
hwloc-info: /usr/local/bin/hwloc-info
hwloc-ls: /usr/local/bin/hwloc-ls
hwloc-patch: /usr/local/bin/hwloc-patch
hwloc-ps: /usr/local/bin/hwloc-ps
lstopo: /usr/local/bin/lstopo
lstopo-no-graphics: /usr/local/bin/lstopo-no-graphics
cmpfillin: /usr/local/bin/cmpfillin
gpmetis: /usr/local/bin/gpmetis
graphchk: /usr/local/bin/graphchk
m2gmetis: /usr/local/bin/m2gmetis
43 changes: 43 additions & 0 deletions quay.io/biocontainers/longreadsum/container.yaml
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url: https://biocontainers.pro/tools/longreadsum
maintainer: '@vsoch'
description: singularity registry hpc automated addition for longreadsum
latest:
1.2.0--py310h6d153b4_0: sha256:5b3c1ef8809f5456de922cfa035cc5fc24bdb98299857936b3765b1a557d0dbb
tags:
1.2.0--py310h6d153b4_0: sha256:5b3c1ef8809f5456de922cfa035cc5fc24bdb98299857936b3765b1a557d0dbb
docker: quay.io/biocontainers/longreadsum
aliases:
bam_plot.py: /usr/local/bin/bam_plot.py
cli.py: /usr/local/bin/cli.py
entry_point.py: /usr/local/bin/entry_point.py
fast5_signal_plot.py: /usr/local/bin/fast5_signal_plot.py
fasta_plot.py: /usr/local/bin/fasta_plot.py
generate_html.py: /usr/local/bin/generate_html.py
longreadsum: /usr/local/bin/longreadsum
plot_utils.py: /usr/local/bin/plot_utils.py
seqtxt_plot.py: /usr/local/bin/seqtxt_plot.py
tjbench: /usr/local/bin/tjbench
mirror_server: /usr/local/bin/mirror_server
mirror_server_stop: /usr/local/bin/mirror_server_stop
fonttools: /usr/local/bin/fonttools
pyftmerge: /usr/local/bin/pyftmerge
pyftsubset: /usr/local/bin/pyftsubset
ttx: /usr/local/bin/ttx
brotli: /usr/local/bin/brotli
f2py3.10: /usr/local/bin/f2py3.10
h5clear: /usr/local/bin/h5clear
h5format_convert: /usr/local/bin/h5format_convert
h5watch: /usr/local/bin/h5watch
h5fc: /usr/local/bin/h5fc
gif2h5: /usr/local/bin/gif2h5
h52gif: /usr/local/bin/h52gif
h5c++: /usr/local/bin/h5c++
h5copy: /usr/local/bin/h5copy
h5debug: /usr/local/bin/h5debug
h5diff: /usr/local/bin/h5diff
h5import: /usr/local/bin/h5import
h5jam: /usr/local/bin/h5jam
h5ls: /usr/local/bin/h5ls
h5mkgrp: /usr/local/bin/h5mkgrp
h5perf_serial: /usr/local/bin/h5perf_serial
h5redeploy: /usr/local/bin/h5redeploy
10 changes: 10 additions & 0 deletions quay.io/biocontainers/mp-est/container.yaml
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url: https://biocontainers.pro/tools/mp-est
maintainer: '@vsoch'
description: singularity registry hpc automated addition for mp-est
latest:
3.0.0--hec16e2b_0: sha256:4ef7a6819f4fc28f2bbe10eda327f53f9249f1bc1747a773572854b05d8cc043
tags:
3.0.0--hec16e2b_0: sha256:4ef7a6819f4fc28f2bbe10eda327f53f9249f1bc1747a773572854b05d8cc043
docker: quay.io/biocontainers/mp-est
aliases:
mpest: /usr/local/bin/mpest
22 changes: 22 additions & 0 deletions quay.io/biocontainers/ncbi-fcs-gx/container.yaml
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url: https://biocontainers.pro/tools/ncbi-fcs-gx
maintainer: '@vsoch'
description: singularity registry hpc automated addition for ncbi-fcs-gx
latest:
0.4.0--h9f5acd7_1: sha256:deb8910250c74e3d808a4515fc971be8c41f43e526ae6951963ad46f14a8ae06
tags:
0.4.0--h9f5acd7_1: sha256:deb8910250c74e3d808a4515fc971be8c41f43e526ae6951963ad46f14a8ae06
docker: quay.io/biocontainers/ncbi-fcs-gx
aliases:
action_report.py: /usr/local/bin/action_report.py
blast_names_mapping.tsv: /usr/local/bin/blast_names_mapping.tsv
classify_taxonomy.py: /usr/local/bin/classify_taxonomy.py
db_exclude.locs.tsv: /usr/local/bin/db_exclude.locs.tsv
gx: /usr/local/bin/gx
run_gx.py: /usr/local/bin/run_gx.py
sync_files.py: /usr/local/bin/sync_files.py
2to3-3.11: /usr/local/bin/2to3-3.11
idle3.11: /usr/local/bin/idle3.11
pydoc3.11: /usr/local/bin/pydoc3.11
python3.11: /usr/local/bin/python3.11
python3.11-config: /usr/local/bin/python3.11-config
python3.1: /usr/local/bin/python3.1
39 changes: 39 additions & 0 deletions quay.io/biocontainers/perl-bio-phylo-forest-dbtree/container.yaml
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url: https://biocontainers.pro/tools/perl-bio-phylo-forest-dbtree
maintainer: '@vsoch'
description: singularity registry hpc automated addition for perl-bio-phylo-forest-dbtree
latest:
0.58--pl5321hdfd78af_0: sha256:683d3fae3f17c3f6cb375fd714adb1a8c4b1cb859fec6b7832c2aaac41f667db
tags:
0.58--pl5321hdfd78af_0: sha256:683d3fae3f17c3f6cb375fd714adb1a8c4b1cb859fec6b7832c2aaac41f667db
docker: quay.io/biocontainers/perl-bio-phylo-forest-dbtree
aliases:
dbicadmin: /usr/local/bin/dbicadmin
megatree-loader: /usr/local/bin/megatree-loader
megatree-ncbi-loader: /usr/local/bin/megatree-ncbi-loader
megatree-phylotree-loader: /usr/local/bin/megatree-phylotree-loader
megatree-pruner: /usr/local/bin/megatree-pruner
config_data: /usr/local/bin/config_data
imgsize: /usr/local/bin/imgsize
xml_grep: /usr/local/bin/xml_grep
xml_merge: /usr/local/bin/xml_merge
xml_pp: /usr/local/bin/xml_pp
xml_spellcheck: /usr/local/bin/xml_spellcheck
xml_split: /usr/local/bin/xml_split
tpage: /usr/local/bin/tpage
ttree: /usr/local/bin/ttree
webtidy: /usr/local/bin/webtidy
tidyp: /usr/local/bin/tidyp
bdf2gdfont.pl: /usr/local/bin/bdf2gdfont.pl
dbilogstrip: /usr/local/bin/dbilogstrip
dbiprof: /usr/local/bin/dbiprof
dbiproxy: /usr/local/bin/dbiproxy
package-stash-conflicts: /usr/local/bin/package-stash-conflicts
htmltree: /usr/local/bin/htmltree
lwp-download: /usr/local/bin/lwp-download
lwp-dump: /usr/local/bin/lwp-dump
lwp-mirror: /usr/local/bin/lwp-mirror
lwp-request: /usr/local/bin/lwp-request
bdftogd: /usr/local/bin/bdftogd
gd2copypal: /usr/local/bin/gd2copypal
gd2togif: /usr/local/bin/gd2togif
gd2topng: /usr/local/bin/gd2topng
12 changes: 12 additions & 0 deletions quay.io/biocontainers/r-proteus-bartongroup/container.yaml
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url: https://biocontainers.pro/tools/r-proteus-bartongroup
maintainer: '@vsoch'
description: singularity registry hpc automated addition for r-proteus-bartongroup
latest:
0.2.16--r42hdfd78af_0: sha256:ccaff64ed1434cbf03a07c871d20ab0b7530801528934c260275ba39a395b471
tags:
0.2.16--r42hdfd78af_0: sha256:ccaff64ed1434cbf03a07c871d20ab0b7530801528934c260275ba39a395b471
docker: quay.io/biocontainers/r-proteus-bartongroup
aliases:
hb-info: /usr/local/bin/hb-info
tjbench: /usr/local/bin/tjbench
pandoc: /usr/local/bin/pandoc
10 changes: 10 additions & 0 deletions quay.io/biocontainers/sciphin/container.yaml
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url: https://biocontainers.pro/tools/sciphin
maintainer: '@vsoch'
description: singularity registry hpc automated addition for sciphin
latest:
1.0.1--h7ff8a90_1: sha256:c9586cd3ed93dd56927a4609a62101051a1f8adbf0e61632bfa39ae41df6b171
tags:
1.0.1--h7ff8a90_1: sha256:c9586cd3ed93dd56927a4609a62101051a1f8adbf0e61632bfa39ae41df6b171
docker: quay.io/biocontainers/sciphin
aliases:
sciphin: /usr/local/bin/sciphin
18 changes: 18 additions & 0 deletions quay.io/biocontainers/t1dgrs2/container.yaml
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url: https://biocontainers.pro/tools/t1dgrs2
maintainer: '@vsoch'
description: singularity registry hpc automated addition for t1dgrs2
latest:
0.1.0--pyhdfd78af_0: sha256:45b18ea2b1920bc84d764312c9db186a771e2d3f7da42ef137568499f5a46b92
tags:
0.1.0--pyhdfd78af_0: sha256:45b18ea2b1920bc84d764312c9db186a771e2d3f7da42ef137568499f5a46b92
docker: quay.io/biocontainers/t1dgrs2
aliases:
plink: /usr/local/bin/plink
f2py3.11: /usr/local/bin/f2py3.11
2to3-3.11: /usr/local/bin/2to3-3.11
idle3.11: /usr/local/bin/idle3.11
pydoc3.11: /usr/local/bin/pydoc3.11
python3.11: /usr/local/bin/python3.11
python3.11-config: /usr/local/bin/python3.11-config
normalizer: /usr/local/bin/normalizer
python3.1: /usr/local/bin/python3.1
35 changes: 35 additions & 0 deletions quay.io/biocontainers/umicollapse/container.yaml
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url: https://biocontainers.pro/tools/umicollapse
maintainer: '@vsoch'
description: singularity registry hpc automated addition for umicollapse
latest:
1.0.0--hdfd78af_1: sha256:756146df626c8c294140d0688e9f3d1d7486707f8ae28d3dbaeffb0ba752d9d8
tags:
1.0.0--hdfd78af_1: sha256:756146df626c8c294140d0688e9f3d1d7486707f8ae28d3dbaeffb0ba752d9d8
docker: quay.io/biocontainers/umicollapse
aliases:
umicollapse: /usr/local/bin/umicollapse
tjbench: /usr/local/bin/tjbench
jpackage: /usr/local/bin/jpackage
2to3-3.11: /usr/local/bin/2to3-3.11
idle3.11: /usr/local/bin/idle3.11
pydoc3.11: /usr/local/bin/pydoc3.11
python3.11: /usr/local/bin/python3.11
python3.11-config: /usr/local/bin/python3.11-config
cups-config: /usr/local/bin/cups-config
ippeveprinter: /usr/local/bin/ippeveprinter
ipptool: /usr/local/bin/ipptool
jfr: /usr/local/bin/jfr
aserver: /usr/local/bin/aserver
jdeprscan: /usr/local/bin/jdeprscan
jhsdb: /usr/local/bin/jhsdb
jimage: /usr/local/bin/jimage
jlink: /usr/local/bin/jlink
jmod: /usr/local/bin/jmod
jshell: /usr/local/bin/jshell
jdeps: /usr/local/bin/jdeps
jar: /usr/local/bin/jar
jarsigner: /usr/local/bin/jarsigner
java: /usr/local/bin/java
javac: /usr/local/bin/javac
javadoc: /usr/local/bin/javadoc
javap: /usr/local/bin/javap

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