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Automated deployment to update containers 2023-09-22 (#157)
Co-authored-by: github-actions <github-actions@users.noreply.github.com>
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,19 @@ | ||
| url: https://biocontainers.pro/tools/dbcanlight | ||
| maintainer: '@vsoch' | ||
| description: singularity registry hpc automated addition for dbcanlight | ||
| latest: | ||
| 1.0.0--pyh7cba7a3_0: sha256:8cc910f8687f27de48da644fefeaa80c0be5355a1885c47ca8a90ac6fc40aa18 | ||
| tags: | ||
| 1.0.0--pyh7cba7a3_0: sha256:8cc910f8687f27de48da644fefeaa80c0be5355a1885c47ca8a90ac6fc40aa18 | ||
| docker: quay.io/biocontainers/dbcanlight | ||
| aliases: | ||
| dbcanLight: /usr/local/bin/dbcanLight | ||
| dbcanLight-hmmparser: /usr/local/bin/dbcanLight-hmmparser | ||
| dbcanLight-subparser: /usr/local/bin/dbcanLight-subparser | ||
| f2py3.10: /usr/local/bin/f2py3.10 | ||
| 2to3-3.10: /usr/local/bin/2to3-3.10 | ||
| idle3.10: /usr/local/bin/idle3.10 | ||
| pydoc3.10: /usr/local/bin/pydoc3.10 | ||
| python3.10: /usr/local/bin/python3.10 | ||
| python3.10-config: /usr/local/bin/python3.10-config | ||
| python3.1: /usr/local/bin/python3.1 |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,98 @@ | ||
| url: https://biocontainers.pro/tools/haplink | ||
| maintainer: '@vsoch' | ||
| description: singularity registry hpc automated addition for haplink | ||
| latest: | ||
| 1.0.0--h031d066_0: sha256:24be64f759b16a0417604d173ab828ac7d555ac4fdf95788676ee8ebe4525300 | ||
| tags: | ||
| 1.0.0--h031d066_0: sha256:24be64f759b16a0417604d173ab828ac7d555ac4fdf95788676ee8ebe4525300 | ||
| docker: quay.io/biocontainers/haplink | ||
| aliases: | ||
| 7z: /usr/local/bin/7z | ||
| 7za: /usr/local/bin/7za | ||
| 7zr: /usr/local/bin/7zr | ||
| git2: /usr/local/bin/git2 | ||
| haplink: /usr/local/bin/haplink | ||
| julia: /usr/local/bin/julia | ||
| mbedtls_aead_demo: /usr/local/bin/mbedtls_aead_demo | ||
| mbedtls_benchmark: /usr/local/bin/mbedtls_benchmark | ||
| mbedtls_cert_app: /usr/local/bin/mbedtls_cert_app | ||
| mbedtls_cert_req: /usr/local/bin/mbedtls_cert_req | ||
| mbedtls_cert_write: /usr/local/bin/mbedtls_cert_write | ||
| mbedtls_cipher_aead_demo: /usr/local/bin/mbedtls_cipher_aead_demo | ||
| mbedtls_crl_app: /usr/local/bin/mbedtls_crl_app | ||
| mbedtls_crypt_and_hash: /usr/local/bin/mbedtls_crypt_and_hash | ||
| mbedtls_crypto_examples: /usr/local/bin/mbedtls_crypto_examples | ||
| mbedtls_dh_client: /usr/local/bin/mbedtls_dh_client | ||
| mbedtls_dh_genprime: /usr/local/bin/mbedtls_dh_genprime | ||
| mbedtls_dh_server: /usr/local/bin/mbedtls_dh_server | ||
| mbedtls_dtls_client: /usr/local/bin/mbedtls_dtls_client | ||
| mbedtls_dtls_server: /usr/local/bin/mbedtls_dtls_server | ||
| mbedtls_ecdh_curve25519: /usr/local/bin/mbedtls_ecdh_curve25519 | ||
| mbedtls_ecdsa: /usr/local/bin/mbedtls_ecdsa | ||
| mbedtls_gen_entropy: /usr/local/bin/mbedtls_gen_entropy | ||
| mbedtls_gen_key: /usr/local/bin/mbedtls_gen_key | ||
| mbedtls_gen_random_ctr_drbg: /usr/local/bin/mbedtls_gen_random_ctr_drbg | ||
| mbedtls_generic_sum: /usr/local/bin/mbedtls_generic_sum | ||
| mbedtls_hello: /usr/local/bin/mbedtls_hello | ||
| mbedtls_hmac_demo: /usr/local/bin/mbedtls_hmac_demo | ||
| mbedtls_key_app: /usr/local/bin/mbedtls_key_app | ||
| mbedtls_key_app_writer: /usr/local/bin/mbedtls_key_app_writer | ||
| mbedtls_key_ladder_demo: /usr/local/bin/mbedtls_key_ladder_demo | ||
| mbedtls_key_ladder_demo.sh: /usr/local/bin/mbedtls_key_ladder_demo.sh | ||
| mbedtls_load_roots: /usr/local/bin/mbedtls_load_roots | ||
| mbedtls_md_hmac_demo: /usr/local/bin/mbedtls_md_hmac_demo | ||
| mbedtls_mini_client: /usr/local/bin/mbedtls_mini_client | ||
| mbedtls_mpi_demo: /usr/local/bin/mbedtls_mpi_demo | ||
| mbedtls_pem2der: /usr/local/bin/mbedtls_pem2der | ||
| mbedtls_pk_decrypt: /usr/local/bin/mbedtls_pk_decrypt | ||
| mbedtls_pk_encrypt: /usr/local/bin/mbedtls_pk_encrypt | ||
| mbedtls_pk_sign: /usr/local/bin/mbedtls_pk_sign | ||
| mbedtls_pk_verify: /usr/local/bin/mbedtls_pk_verify | ||
| mbedtls_psa_constant_names: /usr/local/bin/mbedtls_psa_constant_names | ||
| mbedtls_query_compile_time_config: /usr/local/bin/mbedtls_query_compile_time_config | ||
| mbedtls_req_app: /usr/local/bin/mbedtls_req_app | ||
| mbedtls_rsa_decrypt: /usr/local/bin/mbedtls_rsa_decrypt | ||
| mbedtls_rsa_encrypt: /usr/local/bin/mbedtls_rsa_encrypt | ||
| mbedtls_rsa_genkey: /usr/local/bin/mbedtls_rsa_genkey | ||
| mbedtls_rsa_sign: /usr/local/bin/mbedtls_rsa_sign | ||
| mbedtls_rsa_sign_pss: /usr/local/bin/mbedtls_rsa_sign_pss | ||
| mbedtls_rsa_verify: /usr/local/bin/mbedtls_rsa_verify | ||
| mbedtls_rsa_verify_pss: /usr/local/bin/mbedtls_rsa_verify_pss | ||
| mbedtls_selftest: /usr/local/bin/mbedtls_selftest | ||
| mbedtls_ssl_client1: /usr/local/bin/mbedtls_ssl_client1 | ||
| mbedtls_ssl_client2: /usr/local/bin/mbedtls_ssl_client2 | ||
| mbedtls_ssl_context_info: /usr/local/bin/mbedtls_ssl_context_info | ||
| mbedtls_ssl_fork_server: /usr/local/bin/mbedtls_ssl_fork_server | ||
| mbedtls_ssl_mail_client: /usr/local/bin/mbedtls_ssl_mail_client | ||
| mbedtls_ssl_pthread_server: /usr/local/bin/mbedtls_ssl_pthread_server | ||
| mbedtls_ssl_server: /usr/local/bin/mbedtls_ssl_server | ||
| mbedtls_ssl_server2: /usr/local/bin/mbedtls_ssl_server2 | ||
| mbedtls_strerror: /usr/local/bin/mbedtls_strerror | ||
| mbedtls_udp_proxy: /usr/local/bin/mbedtls_udp_proxy | ||
| mbedtls_zeroize: /usr/local/bin/mbedtls_zeroize | ||
| scalar: /usr/local/bin/scalar | ||
| git: /usr/local/bin/git | ||
| git-cvsserver: /usr/local/bin/git-cvsserver | ||
| git-receive-pack: /usr/local/bin/git-receive-pack | ||
| git-shell: /usr/local/bin/git-shell | ||
| git-upload-archive: /usr/local/bin/git-upload-archive | ||
| git-upload-pack: /usr/local/bin/git-upload-pack | ||
| gitk: /usr/local/bin/gitk | ||
| hwloc-gather-cpuid: /usr/local/bin/hwloc-gather-cpuid | ||
| hwloc-annotate: /usr/local/bin/hwloc-annotate | ||
| hwloc-bind: /usr/local/bin/hwloc-bind | ||
| hwloc-calc: /usr/local/bin/hwloc-calc | ||
| hwloc-compress-dir: /usr/local/bin/hwloc-compress-dir | ||
| hwloc-diff: /usr/local/bin/hwloc-diff | ||
| hwloc-distrib: /usr/local/bin/hwloc-distrib | ||
| hwloc-gather-topology: /usr/local/bin/hwloc-gather-topology | ||
| hwloc-info: /usr/local/bin/hwloc-info | ||
| hwloc-ls: /usr/local/bin/hwloc-ls | ||
| hwloc-patch: /usr/local/bin/hwloc-patch | ||
| hwloc-ps: /usr/local/bin/hwloc-ps | ||
| lstopo: /usr/local/bin/lstopo | ||
| lstopo-no-graphics: /usr/local/bin/lstopo-no-graphics | ||
| cmpfillin: /usr/local/bin/cmpfillin | ||
| gpmetis: /usr/local/bin/gpmetis | ||
| graphchk: /usr/local/bin/graphchk | ||
| m2gmetis: /usr/local/bin/m2gmetis |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,16 @@ | ||
| url: https://biocontainers.pro/tools/hifieval | ||
| maintainer: '@vsoch' | ||
| description: singularity registry hpc automated addition for hifieval | ||
| latest: | ||
| 0.4.0--pyh7cba7a3_0: sha256:e7b8d120ffb31cf51cc71a3f240e77e4519e682684c24d1f469e4224cae459fa | ||
| tags: | ||
| 0.4.0--pyh7cba7a3_0: sha256:e7b8d120ffb31cf51cc71a3f240e77e4519e682684c24d1f469e4224cae459fa | ||
| docker: quay.io/biocontainers/hifieval | ||
| aliases: | ||
| hifieval.py: /usr/local/bin/hifieval.py | ||
| 2to3-3.11: /usr/local/bin/2to3-3.11 | ||
| idle3.11: /usr/local/bin/idle3.11 | ||
| pydoc3.11: /usr/local/bin/pydoc3.11 | ||
| python3.11: /usr/local/bin/python3.11 | ||
| python3.11-config: /usr/local/bin/python3.11-config | ||
| python3.1: /usr/local/bin/python3.1 |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,44 @@ | ||
| url: https://biocontainers.pro/tools/marker-magu | ||
| maintainer: '@vsoch' | ||
| description: singularity registry hpc automated addition for marker-magu | ||
| latest: | ||
| 0.4.0--pyhdfd78af_0: sha256:6fe592fa89def299c3c0cfc83f68f73ae4a240cdb61f536737aa873797359086 | ||
| tags: | ||
| 0.4.0--pyhdfd78af_0: sha256:6fe592fa89def299c3c0cfc83f68f73ae4a240cdb61f536737aa873797359086 | ||
| docker: quay.io/biocontainers/marker-magu | ||
| aliases: | ||
| bwa-mem2: /usr/local/bin/bwa-mem2 | ||
| bwa-mem2.avx: /usr/local/bin/bwa-mem2.avx | ||
| bwa-mem2.avx2: /usr/local/bin/bwa-mem2.avx2 | ||
| bwa-mem2.avx512bw: /usr/local/bin/bwa-mem2.avx512bw | ||
| bwa-mem2.sse41: /usr/local/bin/bwa-mem2.sse41 | ||
| bwa-mem2.sse42: /usr/local/bin/bwa-mem2.sse42 | ||
| coverm: /usr/local/bin/coverm | ||
| dashing: /usr/local/bin/dashing | ||
| markermagu: /usr/local/bin/markermagu | ||
| remove_minimap2_duplicated_headers: /usr/local/bin/remove_minimap2_duplicated_headers | ||
| starcode: /usr/local/bin/starcode | ||
| fastANI: /usr/local/bin/fastANI | ||
| seqkit: /usr/local/bin/seqkit | ||
| fastp: /usr/local/bin/fastp | ||
| igzip: /usr/local/bin/igzip | ||
| basenc: /usr/local/bin/basenc | ||
| b2sum: /usr/local/bin/b2sum | ||
| ls: /usr/local/bin/ls | ||
| base32: /usr/local/bin/base32 | ||
| base64: /usr/local/bin/base64 | ||
| basename: /usr/local/bin/basename | ||
| cat: /usr/local/bin/cat | ||
| chcon: /usr/local/bin/chcon | ||
| chgrp: /usr/local/bin/chgrp | ||
| chmod: /usr/local/bin/chmod | ||
| chown: /usr/local/bin/chown | ||
| chroot: /usr/local/bin/chroot | ||
| cksum: /usr/local/bin/cksum | ||
| comm: /usr/local/bin/comm | ||
| cp: /usr/local/bin/cp | ||
| csplit: /usr/local/bin/csplit | ||
| cut: /usr/local/bin/cut | ||
| date: /usr/local/bin/date | ||
| dd: /usr/local/bin/dd | ||
| df: /usr/local/bin/df |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,72 @@ | ||
| url: https://biocontainers.pro/tools/pixelator | ||
| maintainer: '@vsoch' | ||
| description: singularity registry hpc automated addition for pixelator | ||
| latest: | ||
| 0.13.1--pyh7cba7a3_0: sha256:e8d8f66592293d1c4d3ca771cc038f0370bc572dfb3292880d294ede10b573ab | ||
| tags: | ||
| 0.13.1--pyh7cba7a3_0: sha256:e8d8f66592293d1c4d3ca771cc038f0370bc572dfb3292880d294ede10b573ab | ||
| docker: quay.io/biocontainers/pixelator | ||
| aliases: | ||
| cmtime: /usr/local/bin/cmtime | ||
| elastipubsub5: /usr/local/bin/elastipubsub5 | ||
| h5fuse.sh: /usr/local/bin/h5fuse.sh | ||
| ib_acme: /usr/local/bin/ib_acme | ||
| ibv_asyncwatch: /usr/local/bin/ibv_asyncwatch | ||
| ibv_devices: /usr/local/bin/ibv_devices | ||
| ibv_devinfo: /usr/local/bin/ibv_devinfo | ||
| ibv_rc_pingpong: /usr/local/bin/ibv_rc_pingpong | ||
| ibv_srq_pingpong: /usr/local/bin/ibv_srq_pingpong | ||
| ibv_uc_pingpong: /usr/local/bin/ibv_uc_pingpong | ||
| ibv_ud_pingpong: /usr/local/bin/ibv_ud_pingpong | ||
| ibv_xsrq_pingpong: /usr/local/bin/ibv_xsrq_pingpong | ||
| io_demo: /usr/local/bin/io_demo | ||
| mckey: /usr/local/bin/mckey | ||
| mqtt5_app: /usr/local/bin/mqtt5_app | ||
| mqtt5_canary: /usr/local/bin/mqtt5_canary | ||
| mqtt5canary: /usr/local/bin/mqtt5canary | ||
| pixelator: /usr/local/bin/pixelator | ||
| protoc-23.4.0: /usr/local/bin/protoc-23.4.0 | ||
| pysemver: /usr/local/bin/pysemver | ||
| rcopy: /usr/local/bin/rcopy | ||
| rdma_client: /usr/local/bin/rdma_client | ||
| rdma_server: /usr/local/bin/rdma_server | ||
| rdma_xclient: /usr/local/bin/rdma_xclient | ||
| rdma_xserver: /usr/local/bin/rdma_xserver | ||
| riostream: /usr/local/bin/riostream | ||
| rping: /usr/local/bin/rping | ||
| rstream: /usr/local/bin/rstream | ||
| ucmatose: /usr/local/bin/ucmatose | ||
| ucx_info: /usr/local/bin/ucx_info | ||
| ucx_perftest: /usr/local/bin/ucx_perftest | ||
| ucx_read_profile: /usr/local/bin/ucx_read_profile | ||
| udaddy: /usr/local/bin/udaddy | ||
| udpong: /usr/local/bin/udpong | ||
| umi_tools: /usr/local/bin/umi_tools | ||
| yapf: /usr/local/bin/yapf | ||
| yapf-diff: /usr/local/bin/yapf-diff | ||
| yappi: /usr/local/bin/yappi | ||
| produce_x_platform_fuzz_corpus: /usr/local/bin/produce_x_platform_fuzz_corpus | ||
| run_x_platform_fuzz_corpus: /usr/local/bin/run_x_platform_fuzz_corpus | ||
| pyfastx: /usr/local/bin/pyfastx | ||
| elasticurl: /usr/local/bin/elasticurl | ||
| elasticurl_cpp: /usr/local/bin/elasticurl_cpp | ||
| elastipubsub: /usr/local/bin/elastipubsub | ||
| csv-import: /usr/local/bin/csv-import | ||
| orc-memory: /usr/local/bin/orc-memory | ||
| orc-scan: /usr/local/bin/orc-scan | ||
| timezone-dump: /usr/local/bin/timezone-dump | ||
| fastp: /usr/local/bin/fastp | ||
| h5delete: /usr/local/bin/h5delete | ||
| orc-contents: /usr/local/bin/orc-contents | ||
| orc-metadata: /usr/local/bin/orc-metadata | ||
| orc-statistics: /usr/local/bin/orc-statistics | ||
| sha256_profile: /usr/local/bin/sha256_profile | ||
| igraph: /usr/local/bin/igraph | ||
| scanpy: /usr/local/bin/scanpy | ||
| cutadapt: /usr/local/bin/cutadapt | ||
| gflags_completions.sh: /usr/local/bin/gflags_completions.sh | ||
| hwloc-gather-cpuid: /usr/local/bin/hwloc-gather-cpuid | ||
| hwloc-annotate: /usr/local/bin/hwloc-annotate | ||
| hwloc-bind: /usr/local/bin/hwloc-bind | ||
| hwloc-calc: /usr/local/bin/hwloc-calc | ||
| hwloc-compress-dir: /usr/local/bin/hwloc-compress-dir |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,37 @@ | ||
| url: https://biocontainers.pro/tools/solote | ||
| maintainer: '@vsoch' | ||
| description: singularity registry hpc automated addition for solote | ||
| latest: | ||
| 1.09--hdfd78af_0: sha256:383fe3287fb7b3681c3c1d5959197cebe435801dce42c844ecacb9da58c043ce | ||
| tags: | ||
| 1.09--hdfd78af_0: sha256:383fe3287fb7b3681c3c1d5959197cebe435801dce42c844ecacb9da58c043ce | ||
| docker: quay.io/biocontainers/solote | ||
| aliases: | ||
| SoloTE_RepeatMasker_to_BED.py: /usr/local/bin/SoloTE_RepeatMasker_to_BED.py | ||
| SoloTE_pipeline.py: /usr/local/bin/SoloTE_pipeline.py | ||
| annotateBAM.py: /usr/local/bin/annotateBAM.py | ||
| hb-info: /usr/local/bin/hb-info | ||
| tjbench: /usr/local/bin/tjbench | ||
| shiftBed: /usr/local/bin/shiftBed | ||
| annotateBed: /usr/local/bin/annotateBed | ||
| bamToBed: /usr/local/bin/bamToBed | ||
| bamToFastq: /usr/local/bin/bamToFastq | ||
| bed12ToBed6: /usr/local/bin/bed12ToBed6 | ||
| bedToBam: /usr/local/bin/bedToBam | ||
| bedToIgv: /usr/local/bin/bedToIgv | ||
| bedpeToBam: /usr/local/bin/bedpeToBam | ||
| bedtools: /usr/local/bin/bedtools | ||
| closestBed: /usr/local/bin/closestBed | ||
| clusterBed: /usr/local/bin/clusterBed | ||
| complementBed: /usr/local/bin/complementBed | ||
| coverageBed: /usr/local/bin/coverageBed | ||
| expandCols: /usr/local/bin/expandCols | ||
| fastaFromBed: /usr/local/bin/fastaFromBed | ||
| flankBed: /usr/local/bin/flankBed | ||
| genomeCoverageBed: /usr/local/bin/genomeCoverageBed | ||
| getOverlap: /usr/local/bin/getOverlap | ||
| groupBy: /usr/local/bin/groupBy | ||
| intersectBed: /usr/local/bin/intersectBed | ||
| linksBed: /usr/local/bin/linksBed | ||
| mapBed: /usr/local/bin/mapBed | ||
| maskFastaFromBed: /usr/local/bin/maskFastaFromBed |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,16 @@ | ||
| url: https://biocontainers.pro/tools/transannot | ||
| maintainer: '@vsoch' | ||
| description: singularity registry hpc automated addition for transannot | ||
| latest: | ||
| 1.fa9ebab--pl5321h6a68c12_0: sha256:4e32c47c5372096271de24bf9e49904dd63b7ca3adaeaaa908ed72f3f1e78b51 | ||
| tags: | ||
| 1.fa9ebab--pl5321h6a68c12_0: sha256:4e32c47c5372096271de24bf9e49904dd63b7ca3adaeaaa908ed72f3f1e78b51 | ||
| docker: quay.io/biocontainers/transannot | ||
| aliases: | ||
| transannot: /usr/local/bin/transannot | ||
| aria2c: /usr/local/bin/aria2c | ||
| gawk-5.1.0: /usr/local/bin/gawk-5.1.0 | ||
| awk: /usr/local/bin/awk | ||
| gawk: /usr/local/bin/gawk | ||
| idn2: /usr/local/bin/idn2 | ||
| wget: /usr/local/bin/wget |