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Merge pull request #144 from singularityhub/update/containers-2023-08-21
[bot] update/containers-2023-08-21
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,55 @@ | ||
| url: https://biocontainers.pro/tools/arcsv | ||
| maintainer: '@vsoch' | ||
| description: singularity registry hpc automated addition for arcsv | ||
| latest: | ||
| 1.0.2--hdfd78af_0: sha256:5d41245ef7eb2687bea9b2e604ee89a9696b9889370b35069a976ea42da15540 | ||
| tags: | ||
| 1.0.2--hdfd78af_0: sha256:5d41245ef7eb2687bea9b2e604ee89a9696b9889370b35069a976ea42da15540 | ||
| docker: quay.io/biocontainers/arcsv | ||
| aliases: | ||
| ArcSV: /usr/local/bin/ArcSV | ||
| BKinCheck.pl: /usr/local/bin/BKinCheck.pl | ||
| BKinCheck_len.pl: /usr/local/bin/BKinCheck_len.pl | ||
| bed2pos: /usr/local/bin/bed2pos | ||
| createClip.sh: /usr/local/bin/createClip.sh | ||
| extractBK_bam.sh: /usr/local/bin/extractBK_bam.sh | ||
| extractSoftclipped: /usr/local/bin/extractSoftclipped | ||
| fastqToBKS.pl: /usr/local/bin/fastqToBKS.pl | ||
| filter_PopSpec_AF.sh: /usr/local/bin/filter_PopSpec_AF.sh | ||
| find_record.sh: /usr/local/bin/find_record.sh | ||
| format_header.txt: /usr/local/bin/format_header.txt | ||
| gen_pop_bed.sh: /usr/local/bin/gen_pop_bed.sh | ||
| generateBKSinArc.sh: /usr/local/bin/generateBKSinArc.sh | ||
| generateBKSinArc_each.sh: /usr/local/bin/generateBKSinArc_each.sh | ||
| generateBKSinBam.pl: /usr/local/bin/generateBKSinBam.pl | ||
| generateBKSinBam.sh: /usr/local/bin/generateBKSinBam.sh | ||
| generateBKSinBam_each.sh: /usr/local/bin/generateBKSinBam_each.sh | ||
| getSoftclippedAndNearbySeq.py: /usr/local/bin/getSoftclippedAndNearbySeq.py | ||
| getfastq.sh: /usr/local/bin/getfastq.sh | ||
| pos2bed: /usr/local/bin/pos2bed | ||
| transDeepMEI2BK.sh: /usr/local/bin/transDeepMEI2BK.sh | ||
| gff2gff.py: /usr/local/bin/gff2gff.py | ||
| guess-ploidy.py: /usr/local/bin/guess-ploidy.py | ||
| plot-roh.py: /usr/local/bin/plot-roh.py | ||
| run-roh.pl: /usr/local/bin/run-roh.pl | ||
| color-chrs.pl: /usr/local/bin/color-chrs.pl | ||
| plot-vcfstats: /usr/local/bin/plot-vcfstats | ||
| bcftools: /usr/local/bin/bcftools | ||
| vcfutils.pl: /usr/local/bin/vcfutils.pl | ||
| build_env_setup.sh: /usr/local/bin/build_env_setup.sh | ||
| shiftBed: /usr/local/bin/shiftBed | ||
| conda_build.sh: /usr/local/bin/conda_build.sh | ||
| annotateBed: /usr/local/bin/annotateBed | ||
| bamToBed: /usr/local/bin/bamToBed | ||
| bamToFastq: /usr/local/bin/bamToFastq | ||
| bed12ToBed6: /usr/local/bin/bed12ToBed6 | ||
| bedToBam: /usr/local/bin/bedToBam | ||
| bedToIgv: /usr/local/bin/bedToIgv | ||
| bedpeToBam: /usr/local/bin/bedpeToBam | ||
| bedtools: /usr/local/bin/bedtools | ||
| closestBed: /usr/local/bin/closestBed | ||
| clusterBed: /usr/local/bin/clusterBed | ||
| complementBed: /usr/local/bin/complementBed | ||
| coverageBed: /usr/local/bin/coverageBed | ||
| expandCols: /usr/local/bin/expandCols | ||
| fastaFromBed: /usr/local/bin/fastaFromBed |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,34 @@ | ||
| url: https://biocontainers.pro/tools/hictkpy | ||
| maintainer: '@vsoch' | ||
| description: singularity registry hpc automated addition for hictkpy | ||
| latest: | ||
| 0.0.1--py38hafe3835_0: sha256:ff89d95ef07f27160a713ac61d2e2cf5b797adbe2fadbd83783e4a8a5c757090 | ||
| tags: | ||
| 0.0.1--py38hafe3835_0: sha256:ff89d95ef07f27160a713ac61d2e2cf5b797adbe2fadbd83783e4a8a5c757090 | ||
| docker: quay.io/biocontainers/hictkpy | ||
| aliases: | ||
| h5delete: /usr/local/bin/h5delete | ||
| aec: /usr/local/bin/aec | ||
| f2py3.8: /usr/local/bin/f2py3.8 | ||
| normalizer: /usr/local/bin/normalizer | ||
| h5clear: /usr/local/bin/h5clear | ||
| h5format_convert: /usr/local/bin/h5format_convert | ||
| h5watch: /usr/local/bin/h5watch | ||
| h5fc: /usr/local/bin/h5fc | ||
| gif2h5: /usr/local/bin/gif2h5 | ||
| h52gif: /usr/local/bin/h52gif | ||
| h5c++: /usr/local/bin/h5c++ | ||
| h5copy: /usr/local/bin/h5copy | ||
| h5debug: /usr/local/bin/h5debug | ||
| h5diff: /usr/local/bin/h5diff | ||
| h5import: /usr/local/bin/h5import | ||
| h5jam: /usr/local/bin/h5jam | ||
| h5ls: /usr/local/bin/h5ls | ||
| h5mkgrp: /usr/local/bin/h5mkgrp | ||
| h5perf_serial: /usr/local/bin/h5perf_serial | ||
| h5redeploy: /usr/local/bin/h5redeploy | ||
| h5repack: /usr/local/bin/h5repack | ||
| h5repart: /usr/local/bin/h5repart | ||
| h5stat: /usr/local/bin/h5stat | ||
| h5unjam: /usr/local/bin/h5unjam | ||
| h5dump: /usr/local/bin/h5dump |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,16 @@ | ||
| url: https://biocontainers.pro/tools/polars | ||
| maintainer: '@vsoch' | ||
| description: singularity registry hpc automated addition for polars | ||
| latest: | ||
| 0.18.15: sha256:c0bb629324ea23eeda9f4983abb0985d4c1f652fb2f801d0512e6bfa1a06a92e | ||
| tags: | ||
| 0.18.15: sha256:c0bb629324ea23eeda9f4983abb0985d4c1f652fb2f801d0512e6bfa1a06a92e | ||
| docker: quay.io/biocontainers/polars | ||
| aliases: | ||
| f2py3.11: /usr/local/bin/f2py3.11 | ||
| 2to3-3.11: /usr/local/bin/2to3-3.11 | ||
| idle3.11: /usr/local/bin/idle3.11 | ||
| pydoc3.11: /usr/local/bin/pydoc3.11 | ||
| python3.11: /usr/local/bin/python3.11 | ||
| python3.11-config: /usr/local/bin/python3.11-config | ||
| python3.1: /usr/local/bin/python3.1 |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,15 @@ | ||
| url: https://biocontainers.pro/tools/sativa | ||
| maintainer: '@vsoch' | ||
| description: singularity registry hpc automated addition for sativa | ||
| latest: | ||
| 0.9.1--py311h031d066_0: sha256:7d13ff9bc4af7ea05d490512299a373053acb706879562abff1e06e4c080fcd7 | ||
| tags: | ||
| 0.9.1--py311h031d066_0: sha256:7d13ff9bc4af7ea05d490512299a373053acb706879562abff1e06e4c080fcd7 | ||
| docker: quay.io/biocontainers/sativa | ||
| aliases: | ||
| 2to3-3.11: /usr/local/bin/2to3-3.11 | ||
| idle3.11: /usr/local/bin/idle3.11 | ||
| pydoc3.11: /usr/local/bin/pydoc3.11 | ||
| python3.11: /usr/local/bin/python3.11 | ||
| python3.11-config: /usr/local/bin/python3.11-config | ||
| python3.1: /usr/local/bin/python3.1 |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,20 @@ | ||
| url: https://biocontainers.pro/tools/xengsort | ||
| maintainer: '@vsoch' | ||
| description: singularity registry hpc automated addition for xengsort | ||
| latest: | ||
| 1.5.0.3--pyhdfd78af_0: sha256:58e61fb25e77488323af66449876b5f389c3c77857a0524750b30ba3a3f068fd | ||
| tags: | ||
| 1.5.0.3--pyhdfd78af_0: sha256:58e61fb25e77488323af66449876b5f389c3c77857a0524750b30ba3a3f068fd | ||
| docker: quay.io/biocontainers/xengsort | ||
| aliases: | ||
| xengsort: /usr/local/bin/xengsort | ||
| f2py3.11: /usr/local/bin/f2py3.11 | ||
| numba: /usr/local/bin/numba | ||
| py.test: /usr/local/bin/py.test | ||
| pytest: /usr/local/bin/pytest | ||
| 2to3-3.11: /usr/local/bin/2to3-3.11 | ||
| idle3.11: /usr/local/bin/idle3.11 | ||
| pydoc3.11: /usr/local/bin/pydoc3.11 | ||
| python3.11: /usr/local/bin/python3.11 | ||
| python3.11-config: /usr/local/bin/python3.11-config | ||
| python3.1: /usr/local/bin/python3.1 |