Automated deployment to update containers 2023-06-15 (#121)

Co-authored-by: github-actions <github-actions@users.noreply.github.com>

quay.io/biocontainers/compleasm/container.yaml

@@ -0,0 +1,43 @@
+url: https://biocontainers.pro/tools/compleasm
+maintainer: '@vsoch'
+description: singularity registry hpc automated addition for compleasm
+latest:
+  0.2.2--pyh7cba7a3_0: sha256:f4e232d2e1861d9d3be59d61bc555b59f3308e57ae5054ee99287986152dad25
+tags:
+  0.2.2--pyh7cba7a3_0: sha256:f4e232d2e1861d9d3be59d61bc555b59f3308e57ae5054ee99287986152dad25
+docker: quay.io/biocontainers/compleasm
+aliases:
+  compleasm: /usr/local/bin/compleasm
+  hb-info: /usr/local/bin/hb-info
+  jwebserver: /usr/local/bin/jwebserver
+  miniprot: /usr/local/bin/miniprot
+  run-sepp.sh: /usr/local/bin/run-sepp.sh
+  run_sepp.py: /usr/local/bin/run_sepp.py
+  run_upp.py: /usr/local/bin/run_upp.py
+  seppJsonMerger.jar: /usr/local/bin/seppJsonMerger.jar
+  split_sequences.py: /usr/local/bin/split_sequences.py
+  hmmc2: /usr/local/bin/hmmc2
+  hmmerfm-exactmatch: /usr/local/bin/hmmerfm-exactmatch
+  guppy: /usr/local/bin/guppy
+  pplacer: /usr/local/bin/pplacer
+  dendropy-format: /usr/local/bin/dendropy-format
+  tjbench: /usr/local/bin/tjbench
+  sumlabels.py: /usr/local/bin/sumlabels.py
+  sumtrees.py: /usr/local/bin/sumtrees.py
+  jpackage: /usr/local/bin/jpackage
+  cups-config: /usr/local/bin/cups-config
+  ippeveprinter: /usr/local/bin/ippeveprinter
+  ipptool: /usr/local/bin/ipptool
+  alimask: /usr/local/bin/alimask
+  hmmconvert: /usr/local/bin/hmmconvert
+  hmmemit: /usr/local/bin/hmmemit
+  hmmfetch: /usr/local/bin/hmmfetch
+  hmmlogo: /usr/local/bin/hmmlogo
+  hmmpgmd: /usr/local/bin/hmmpgmd
+  hmmpress: /usr/local/bin/hmmpress
+  hmmscan: /usr/local/bin/hmmscan
+  hmmsearch: /usr/local/bin/hmmsearch
+  hmmsim: /usr/local/bin/hmmsim
+  hmmstat: /usr/local/bin/hmmstat
+  jackhmmer: /usr/local/bin/jackhmmer
+  makehmmerdb: /usr/local/bin/makehmmerdb

quay.io/biocontainers/perl-bio-bpwrapper/container.yaml

@@ -0,0 +1,112 @@
+url: https://biocontainers.pro/tools/perl-bio-bpwrapper
+maintainer: '@vsoch'
+description: singularity registry hpc automated addition for perl-bio-bpwrapper
+latest:
+  1.15--pl5321hdfd78af_0: sha256:c8a67ab6720fdadec9d1d0f9b49db6487b84ee1e1266153b2ac04b1d528db494
+tags:
+  1.15--pl5321hdfd78af_0: sha256:c8a67ab6720fdadec9d1d0f9b49db6487b84ee1e1266153b2ac04b1d528db494
+docker: quay.io/biocontainers/perl-bio-bpwrapper
+aliases:
+  DrawGram.jar: /usr/local/bin/DrawGram.jar
+  DrawTree.jar: /usr/local/bin/DrawTree.jar
+  TMscore: /usr/local/bin/TMscore
+  bioaln: /usr/local/bin/bioaln
+  bioseq: /usr/local/bin/bioseq
+  biotree: /usr/local/bin/biotree
+  bstats: /usr/local/bin/bstats
+  clique: /usr/local/bin/clique
+  comppair: /usr/local/bin/comppair
+  consense: /usr/local/bin/consense
+  contml: /usr/local/bin/contml
+  contrast: /usr/local/bin/contrast
+  conus_compare: /usr/local/bin/conus_compare
+  conus_train: /usr/local/bin/conus_train
+  dca: /usr/local/bin/dca
+  dialign-tx: /usr/local/bin/dialign-tx
+  dnacomp: /usr/local/bin/dnacomp
+  dnadist: /usr/local/bin/dnadist
+  dnainvar: /usr/local/bin/dnainvar
+  dnaml: /usr/local/bin/dnaml
+  dnamlk: /usr/local/bin/dnamlk
+  dnamove: /usr/local/bin/dnamove
+  dnapars: /usr/local/bin/dnapars
+  dnapenny: /usr/local/bin/dnapenny
+  dollop: /usr/local/bin/dollop
+  dolmove: /usr/local/bin/dolmove
+  dolpenny: /usr/local/bin/dolpenny
+  drawgram: /usr/local/bin/drawgram
+  drawgram_gui: /usr/local/bin/drawgram_gui
+  drawtree: /usr/local/bin/drawtree
+  drawtree_gui: /usr/local/bin/drawtree_gui
+  fakealigner: /usr/local/bin/fakealigner
+  faketree: /usr/local/bin/faketree
+  famsa: /usr/local/bin/famsa
+  fasttreeMP: /usr/local/bin/fasttreeMP
+  fitch: /usr/local/bin/fitch
+  gendist: /usr/local/bin/gendist
+  hmmeralign: /usr/local/bin/hmmeralign
+  hmmerbuild: /usr/local/bin/hmmerbuild
+  hyperopt-mongo-worker: /usr/local/bin/hyperopt-mongo-worker
+  kalign: /usr/local/bin/kalign
+  kitsch: /usr/local/bin/kitsch
+  matplotlib: /usr/local/bin/matplotlib
+  mix: /usr/local/bin/mix
+  move: /usr/local/bin/move
+  mustang: /usr/local/bin/mustang
+  neighbor: /usr/local/bin/neighbor
+  opal.jar: /usr/local/bin/opal.jar
+  pModel: /usr/local/bin/pModel
+  padaligner: /usr/local/bin/padaligner
+  pars: /usr/local/bin/pars
+  penny: /usr/local/bin/penny
+  phylip: /usr/local/bin/phylip
+  probcons: /usr/local/bin/probcons
+  probconsRNA: /usr/local/bin/probconsRNA
+  proml: /usr/local/bin/proml
+  promlk: /usr/local/bin/promlk
+  protdist: /usr/local/bin/protdist
+  protpars: /usr/local/bin/protpars
+  randtree: /usr/local/bin/randtree
+  raxml: /usr/local/bin/raxml
+  raxmlp: /usr/local/bin/raxmlp
+  rbs: /usr/local/bin/rbs
+  rdbg: /usr/local/bin/rdbg
+  restdist: /usr/local/bin/restdist
+  restml: /usr/local/bin/restml
+  retree: /usr/local/bin/retree
+  run_pasta.py: /usr/local/bin/run_pasta.py
+  run_pasta_gui.py: /usr/local/bin/run_pasta_gui.py
+  run_seqtools.py: /usr/local/bin/run_seqtools.py
+  sap: /usr/local/bin/sap
+  scalar: /usr/local/bin/scalar
+  scompare: /usr/local/bin/scompare
+  seqboot: /usr/local/bin/seqboot
+  sfold: /usr/local/bin/sfold
+  strain_ml: /usr/local/bin/strain_ml
+  treedist: /usr/local/bin/treedist
+  typeprof: /usr/local/bin/typeprof
+  TMalign: /usr/local/bin/TMalign
+  dunamai: /usr/local/bin/dunamai
+  racc: /usr/local/bin/racc
+  make_pscores.pl: /usr/local/bin/make_pscores.pl
+  poa: /usr/local/bin/poa
+  bundle: /usr/local/bin/bundle
+  bundler: /usr/local/bin/bundler
+  prank: /usr/local/bin/prank
+  gdbm_dump: /usr/local/bin/gdbm_dump
+  gdbm_load: /usr/local/bin/gdbm_load
+  gdbmtool: /usr/local/bin/gdbmtool
+  clustalo: /usr/local/bin/clustalo
+  git: /usr/local/bin/git
+  git-cvsserver: /usr/local/bin/git-cvsserver
+  git-receive-pack: /usr/local/bin/git-receive-pack
+  git-shell: /usr/local/bin/git-shell
+  git-upload-archive: /usr/local/bin/git-upload-archive
+  git-upload-pack: /usr/local/bin/git-upload-pack
+  gitk: /usr/local/bin/gitk
+  bl2seq: /usr/local/bin/bl2seq
+  blastall: /usr/local/bin/blastall
+  blastclust: /usr/local/bin/blastclust
+  blastpgp: /usr/local/bin/blastpgp
+  copymat: /usr/local/bin/copymat
+  erb: /usr/local/bin/erb

quay.io/biocontainers/vamos/container.yaml

@@ -0,0 +1,13 @@
+url: https://biocontainers.pro/tools/vamos
+maintainer: '@vsoch'
+description: singularity registry hpc automated addition for vamos
+latest:
+  1.2.6--hd7d8470_0: sha256:479ebf30b12dc718ee1b18e72d73ca8aa1f5cc0fa98016b645754d961987fde6
+tags:
+  1.2.6--hd7d8470_0: sha256:479ebf30b12dc718ee1b18e72d73ca8aa1f5cc0fa98016b645754d961987fde6
+docker: quay.io/biocontainers/vamos
+aliases:
+  vamos: /usr/local/bin/vamos
+  htsfile: /usr/local/bin/htsfile
+  bgzip: /usr/local/bin/bgzip
+  tabix: /usr/local/bin/tabix

quay.io/biocontainers/vcf2circos/container.yaml

@@ -0,0 +1,35 @@
+url: https://biocontainers.pro/tools/vcf2circos
+maintainer: '@vsoch'
+description: singularity registry hpc automated addition for vcf2circos
+latest:
+  1.1--pyhdfd78af_0: sha256:5173d4e762b3a88713dc40a2d70d0d44bd6198d6e63b84710927ce31df60bc37
+tags:
+  1.1--pyhdfd78af_0: sha256:5173d4e762b3a88713dc40a2d70d0d44bd6198d6e63b84710927ce31df60bc37
+docker: quay.io/biocontainers/vcf2circos
+aliases:
+  kaleido: /usr/local/bin/kaleido
+  mathjax-path: /usr/local/bin/mathjax-path
+  pyfiglet: /usr/local/bin/pyfiglet
+  vcf2circos: /usr/local/bin/vcf2circos
+  dash-generate-components: /usr/local/bin/dash-generate-components
+  flask: /usr/local/bin/flask
+  vcf_sample_filter.py: /usr/local/bin/vcf_sample_filter.py
+  vcf_filter.py: /usr/local/bin/vcf_filter.py
+  vcf_melt: /usr/local/bin/vcf_melt
+  f2py3.11: /usr/local/bin/f2py3.11
+  ipython3: /usr/local/bin/ipython3
+  ipython: /usr/local/bin/ipython
+  2to3-3.11: /usr/local/bin/2to3-3.11
+  idle3.11: /usr/local/bin/idle3.11
+  pydoc3.11: /usr/local/bin/pydoc3.11
+  python3.11: /usr/local/bin/python3.11
+  python3.11-config: /usr/local/bin/python3.11-config
+  certutil: /usr/local/bin/certutil
+  nspr-config: /usr/local/bin/nspr-config
+  nss-config: /usr/local/bin/nss-config
+  pk12util: /usr/local/bin/pk12util
+  pygmentize: /usr/local/bin/pygmentize
+  tqdm: /usr/local/bin/tqdm
+  brotli: /usr/local/bin/brotli
+  normalizer: /usr/local/bin/normalizer
+  python3.1: /usr/local/bin/python3.1

quay.io/biocontainers/viguno/container.yaml

@@ -0,0 +1,10 @@
+url: https://biocontainers.pro/tools/viguno
+maintainer: '@vsoch'
+description: singularity registry hpc automated addition for viguno
+latest:
+  0.1.1--h7e29777_0: sha256:8a42109d38493410adf689fa56a859c7cec55efe6d85f02b0c3f0a694e02234f
+tags:
+  0.1.1--h7e29777_0: sha256:8a42109d38493410adf689fa56a859c7cec55efe6d85f02b0c3f0a694e02234f
+docker: quay.io/biocontainers/viguno
+aliases:
+  viguno: /usr/local/bin/viguno