-
-
Notifications
You must be signed in to change notification settings - Fork 23
Commit
This commit does not belong to any branch on this repository, and may belong to a fork outside of the repository.
* Adding new registry recipes On branch registryupdate Changes to be committed: new file: canu.yml new file: clustalo.yml new file: cutadapt.yml new file: diamond.yml new file: fastqc.yml new file: gatk4.yml new file: maker.yml new file: mrbayes.yml new file: mummer.yml * Rename canu.yml to quay.io/biocontainers/can/container.yaml * Rename clustalo.yml to quay.io/biocontainers/clustalo.yaml * Rename quay.io/biocontainers/can/container.yaml to registry/quay.io/biocontainers/canu/container.yaml * Update and rename quay.io/biocontainers/clustalo.yaml to registry/quay.io/biocontainers/clustalo/container.yaml * Rename cutadapt.yml to registry/quay.io/biocontainers/cut adapt/container.yaml * Rename diamond.yml to registry/quay.io/biocontainers/diamond/container.yaml * Rename fastqc.yml to registry/quay.io/biocontainers/fastqc/container.yaml * Rename gatk4.yml to registry/quay.io/biocontainers/gatk4/container.yaml * Rename maker.yml to registry/quay.io/biocontainers/maker/container.yaml * Rename mrbayes.yml to registry/quay.io/biocontainers/mrbayes/container.yml * Rename mummer.yml to registry/quay.io/biocontainers/mummer/container.yaml * Update and rename registry/quay.io/biocontainers/cut adapt/container.yaml to registry/quay.io/biocontainers/cutadapt/container.yaml * Update and rename container.yml to container.yaml * Update registry/quay.io/biocontainers/mummer/container.yaml Co-authored-by: Vanessasaurus <814322+vsoch@users.noreply.github.com> Co-authored-by: Vanessasaurus <814322+vsoch@users.noreply.github.com>
- Loading branch information
1 parent
8545fdd
commit 66d7a72
Showing
9 changed files
with
110 additions
and
0 deletions.
There are no files selected for viewing
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,12 @@ | ||
| docker: quay.io/biocontainers/canu | ||
| latest: | ||
| "2.1.1--h1b792b2_2": | ||
| "sha256:b48b52afc355477015ef60bebded3b4ab3d3099bbf5698879de8eb600c9ff1a4" | ||
| tags: | ||
| "2.1.1--he1b5a44_1": | ||
| "sha256:a28f4d1b2289d7f42e47efc0d35ad76ab28cc43a40d2b32aa857eda9c428718d" | ||
| maintainer: "@sarahbeecroft" | ||
| description: "Canu is a fork of the celera assembler designed for high-noise single-molecule sequencing" | ||
| url: https://quay.io/repository/biocontainers/canu | ||
| aliases: | ||
| canu: /usr/local/bin/canu |
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,12 @@ | ||
| docker: quay.io/biocontainers/clustalo | ||
| latest: | ||
| "1.2.4--h1b792b2_4": | ||
| "sha256:5c2d9d0ab6b459078bec701d44daffbdb31f4e87c8382b0ed07da24d46ee39af" | ||
| tags: | ||
| "1.2.4--he1b5a44_3": | ||
| "sha256:6703d1623f640ddf7212d7541eea083e2327988c28b7952efc8f6cbe5bf785d1" | ||
| maintainer: "@sarahbeecroft" | ||
| description: "Multiple sequence alignment program for aligning 3+ sequences together" | ||
| url: https://quay.io/repository/biocontainers/clustalo | ||
| aliases: | ||
| clustalo: /usr/local/bin/clustalo |
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,12 @@ | ||
| docker: quay.io/biocontainers/cutadapt | ||
| latest: | ||
| "3.4--py37h73a75cf_1": | ||
| "sha256:12e96e635cf387b7969a2cfefadfe79d893bb3ad33cb03dc500451900111a6dc" | ||
| tags: | ||
| "3.4--py38h4a8c8d9_1": | ||
| "sha256:489eda33229f60e7ca8e0397f95c775d53d6f40fa0baed04386e3726d4e9e136" | ||
| maintainer: "@sarahbeecroft" | ||
| description: "Trim adapters from high-throughput sequencing reads" | ||
| url: https://quay.io/repository/biocontainers/cutadapt | ||
| aliases: | ||
| cutadapt: /usr/local/bin/cutadapt |
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,12 @@ | ||
| docker: quay.io/biocontainers/diamond | ||
| latest: | ||
| "2.0.9--hdcc8f71_0": | ||
| "sha256:3e6ab3300dbbad7d86a0827813cc840d5454e762f10c325c3e28b61b0c2bfc72" | ||
| tags: | ||
| "0.8.26--h2e03b76_4": | ||
| "sha256:1bdf8de97dfdfb795a14cecf22cc7b249801ac9886e187533c3b1cf3c9cb7613" | ||
| maintainer: "@sarahbeecroft" | ||
| description: "Accelerated blast compatible local sequence aligner" | ||
| url: https://quay.io/repository/biocontainers/diamond | ||
| aliases: | ||
| diamond: /usr/local/bin/diamond |
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,12 @@ | ||
| docker: quay.io/biocontainers/fastqc | ||
| latest: | ||
| "0.11.9--hdfd78af_1": | ||
| "sha256:0c60406af11b0723339df05b10a592aa3f8c9a4d2ec8f213cbe11051e7264a25" | ||
| tags: | ||
| "0.11.7--hdfd78af_7": | ||
| "sha256:cd90a6413e43865cacfa9e2217169d0acd38f3f6d6bee621cc7eac6f68cae823" | ||
| maintainer: "@sarahbeecroft" | ||
| description: "A quality control tool for high throughput sequence data" | ||
| url: https://quay.io/repository/biocontainers/fastqc | ||
| aliases: | ||
| fastqc: /usr/local/bin/fastqc |
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,12 @@ | ||
| docker: quay.io/biocontainers/gatk4 | ||
| latest: | ||
| "4.2.0.0--hdfd78af_1": | ||
| "sha256:9d65f14f0fc4637d582be624d173e94baddcfa4abe1bdecc609dcc69c62407f0" | ||
| tags: | ||
| "4.1.9.0--py39_0": | ||
| "sha256:7b0b112b595861b140cbebdec5a0534bea9c40ef8bea4b3927fcea7ec53f5f57" | ||
| description: "An open source toolkit frequently used by most genomic research and clinical analyses" | ||
| maintainer: "@sarahbeecroft" | ||
| url: https://quay.io/repository/biocontainers/gatk4 | ||
| aliases: | ||
| gatk: /usr/local/bin/gatk |
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,12 @@ | ||
| docker: quay.io/biocontainers/maker | ||
| latest: | ||
| "3.01.03--pl5262h8f1cd36_1": | ||
| "sha256:1a588e177ae87eee1bf54edebe245b41ef2fbd7f0261762398c3b62883bbcd60" | ||
| tags: | ||
| "2.31.11--pl526h61907ee_0": | ||
| "sha256:b9bd2979ddc5f74effd67c03d56a7f4f2640b36e242c54e2337ade9c5b6dca98" | ||
| description: "A portable and easily configurable genome annotation pipeline" | ||
| maintainer: "@sarahbeecroft" | ||
| url: https://quay.io/repository/biocontainers/maker | ||
| aliases: | ||
| maker: /usr/local/bin/maker |
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,14 @@ | ||
| docker: quay.io/biocontainers/mrbayes | ||
| latest: | ||
| "3.2.6--0": | ||
| "sha256:a81b94e4659014c25c5840b01f1f5ba5b635d2ce061134e2911f55f974c49b3f" | ||
| tags: | ||
| "3.2.6--0": | ||
| "sha256:a81b94e4659014c25c5840b01f1f5ba5b635d2ce061134e2911f55f974c49b3f" | ||
| "3.2.7--h19cf415_2": | ||
| "sha256:893140dd1c0019013652f77f379641cadf1c43d7d96b9cef35cf8d1475f25991" | ||
| description: "A program for Bayesian inference and model choice across a wide range of phylogenetic and evolutionary models" | ||
| maintainer: "@sarahbeecroft" | ||
| url: https://quay.io/repository/biocontainers/mrbayes | ||
| aliases: | ||
| mb: /usr/local/bin/mb |
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,12 @@ | ||
| docker: quay.io/biocontainers/mummer | ||
| latest: | ||
| "3.23--pl5262h1b792b2_12": | ||
| "sha256:fededb4e6f2e5b5df4d76f7403fe4f4df46931834a02a0e13dde4e6451b21dc6" | ||
| tags: | ||
| "3.23--pl526he1b5a44_11": | ||
| "sha256:2a0b6a706b92f2507d033bef6d3e4fe6bca2104f44e870447b414cfa34e67c38" | ||
| description: "MUMmer is a system for rapidly aligning entire genomes in complete or in draft form." | ||
| maintainer: "@sarahbeecroft" | ||
| url: https://quay.io/repository/biocontainers/mummer | ||
| aliases: | ||
| mummer: /usr/local/bin/mummer |