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Sirius 6 How do I know which Sirius internal ID corresponds to in the original ID in the input file? #165
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As a supplement, I tried to replace the original ID by the simpler value, e.g. C1, C2 and C3. But the problem still existed. |
Hey, are you able to share an example mgf containing compounds with an "original ID"? |
Of course, here's two features in my .mgf. The raw data (waters,
|
Hi, The correct .mgf field for that is FEATURE_ID, not TITLE. The .mgf format is not really standardized, so everybody kind of uses different fields for different purposes. We use the TITLE field strictly as a name and grouping parameter, and the FEATURE_ID for the mapping. For now, you could replace all your "TITLE" occurences with "FEATURE_ID", I'll check if TITLE and NAME are fields that we want to use as backup feature ids, if they are not defined |
Thank you very much indeed!!!! My problem was solved perfectly! |
Hello,
I did a compound annotation task of mgf data using Sirius 6 with GUI. Everything was perfect until the results were exported.
But when I exported the summary file, I found that
1).tsv files had no original ID, only Sirius ID.
For example: a feature in .mgf had an original ID of
Unkown(0.09_396.0852m/z)
and a Sirius ID of589266962313865030
, as shown below (in Sirius 6 GUI).In all exported .tsv, there iwas no original ID. The exported IDs are as follows. .mgf and table derived from "FBMN export" were also all Sirius ID.
2)No report.mztab file was exported
So, I have no way of knowing which Sirius internal ID corresponds to in the original ID in the .mgf file, except in the GUI. However, I have thousands of features and cannot manually check them one by one on the GUI.
Is there any other way to get it?
Thank you very much!
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