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setup.py
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setup.py
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from glob import glob
import os
from setuptools import setup, find_packages
def read(fname):
return open(os.path.join(os.path.dirname(__file__), fname)).read()
setup(name='stackimpute',
version='0.0.1-beta',
description='stacking machine learning model for CpG methylation imputation',
# long_description=read('README.rst'),
author='Yi Liu',
author_email='yiliu11@zju.edu.cn',
license="MIT",
url='https://github.com/sixone11/stackimpute',
packages=find_packages(),
# data_files=[
# ('stackimpute', ['data/*.out'])],
package_data={'stackimpute': ['data/*.tsv']},
include_package_data=True,
scripts=glob('./scripts/*.py'),
install_requires=['shap',
'argparse',
'scikit-learn',
'scipy',
'pandas',
'numpy',
'xgboost'],
keywords=['machine learning',
'DNA methylation',
'imputation',
'stacking model'],
classifiers=['Development Status :: 3 - Alpha',
'Environment :: Console',
'Intended Audience :: Science/Research',
'License :: OSI Approved :: MIT License',
'Natural Language :: English',
'Programming Language :: Python :: 3.8',
'Topic :: Scientific/Engineering :: Artificial Intelligence',
'Topic :: Scientific/Engineering :: Bio-Informatics',
]
)