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[MNT] 0.18.0 change action - numba as soft dependency #3843

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merged 231 commits into from Apr 25, 2023
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e1c3ac3
TDE
fkiraly Oct 22, 2022
6cd5c90
WEASEL
fkiraly Oct 22, 2022
da6c3dd
CIT
fkiraly Oct 22, 2022
9ecb98c
Update _continuous_interval_tree.py
fkiraly Oct 22, 2022
3b00fa5
deal with entropy differently
fkiraly Oct 22, 2022
4a358e4
revert cit
fkiraly Oct 22, 2022
04dd863
move numba method out in separate private module
fkiraly Nov 4, 2022
5fc467f
linting
fkiraly Nov 4, 2022
74e9a53
Merge branch 'main' into isolate_numba
fkiraly Nov 27, 2022
666e6ff
numba as softdep
fkiraly Nov 27, 2022
7439951
Merge branch 'isolate_numba' into numba_softdep
fkiraly Nov 27, 2022
c6bd791
rise
fkiraly Nov 27, 2022
1955cd0
dba
fkiraly Nov 27, 2022
15a9fcb
Merge branch 'isolate_numba' into numba_softdep
fkiraly Nov 27, 2022
0e22526
distance
fkiraly Nov 27, 2022
89ef255
Merge branch 'isolate_numba' into numba_softdep
fkiraly Nov 27, 2022
393c892
linting
fkiraly Nov 27, 2022
79d32f0
Merge branch 'isolate_numba' into numba_softdep
fkiraly Nov 27, 2022
3d4c291
linting
fkiraly Nov 27, 2022
ae352c5
Merge branch 'isolate_numba' into numba_softdep
fkiraly Nov 27, 2022
d316f7d
ddtw
fkiraly Nov 27, 2022
7b88858
cif
fkiraly Nov 27, 2022
2df5054
ddtw
fkiraly Nov 27, 2022
fdf1d33
Merge branch 'isolate_numba' into numba_softdep
fkiraly Nov 27, 2022
2d2f8d8
distance
fkiraly Nov 27, 2022
7e7151e
Merge branch 'isolate_numba' into numba_softdep
fkiraly Nov 27, 2022
ba39686
wddtw
fkiraly Nov 27, 2022
b539443
linting
fkiraly Nov 27, 2022
492ec26
cif
fkiraly Nov 27, 2022
7de9e29
Merge branch 'isolate_numba' into numba_softdep
fkiraly Nov 27, 2022
096b4f0
cif, drcif dependency tag
fkiraly Nov 27, 2022
d7242fa
cif, drcif dependency tag
fkiraly Nov 27, 2022
51549c0
Merge branch 'isolate_numba' into numba_softdep
fkiraly Nov 27, 2022
76fb7eb
isolate _distance_alignment_paths
fkiraly Nov 27, 2022
8d30476
rocket
fkiraly Nov 27, 2022
fcaa859
multirocket
fkiraly Nov 27, 2022
674ba4b
TreeNode bugfix
fkiraly Nov 27, 2022
2523aaa
Merge branch 'isolate_numba' into numba_softdep
fkiraly Nov 27, 2022
482146c
dtw
fkiraly Nov 27, 2022
5374d60
CIT fix
fkiraly Nov 27, 2022
9043a10
Merge branch 'isolate_numba' into numba_softdep
fkiraly Nov 27, 2022
1c4254d
_cost_matrix
fkiraly Nov 27, 2022
47e4439
_cost_matrix fix
fkiraly Nov 27, 2022
cf702ac
Merge branch 'isolate_numba' into numba_softdep
fkiraly Nov 27, 2022
5a7ddb0
_cost_matrix
fkiraly Nov 27, 2022
09341b4
Merge branch 'isolate_numba' into numba_softdep
fkiraly Nov 27, 2022
66ba3c2
linting
fkiraly Nov 27, 2022
db03433
Merge branch 'isolate_numba' into numba_softdep
fkiraly Nov 27, 2022
7fae6d0
is_no_python_compiled_callable
fkiraly Nov 27, 2022
57d12d9
module docstrings
fkiraly Nov 27, 2022
3e0354f
python dependency in classes
fkiraly Nov 27, 2022
5fc22d0
Update edit_dist.py
fkiraly Nov 27, 2022
cbb6746
wdtw
fkiraly Nov 27, 2022
00e1ebe
Merge branch 'isolate_numba' into numba_softdep
fkiraly Nov 27, 2022
ad60345
linting
fkiraly Nov 27, 2022
eac2b46
Merge branch 'isolate_numba' into numba_softdep
fkiraly Nov 27, 2022
88a3096
resolve_bounding_matrix
fkiraly Nov 27, 2022
e01197a
Merge branch 'isolate_numba' into numba_softdep
fkiraly Nov 27, 2022
ddc2570
resolve_bounding_matrix
fkiraly Nov 27, 2022
f462e0b
edr
fkiraly Nov 27, 2022
693b2ad
Merge branch 'isolate_numba' into numba_softdep
fkiraly Nov 27, 2022
d6f722b
linting
fkiraly Nov 27, 2022
0081a88
Merge branch 'isolate_numba' into numba_softdep
fkiraly Nov 27, 2022
086d9f3
erp
fkiraly Nov 27, 2022
82c60a5
euclidean
fkiraly Nov 27, 2022
4175478
lcss
fkiraly Nov 28, 2022
90f9287
msm
fkiraly Nov 28, 2022
5cbc690
squared
fkiraly Nov 28, 2022
2d623c6
twe
fkiraly Nov 28, 2022
82e2390
Merge branch 'isolate_numba' into numba_softdep
fkiraly Nov 28, 2022
dd7b71c
_distance
fkiraly Nov 28, 2022
98bd31c
wdtw fix
fkiraly Nov 28, 2022
c6e8f3c
mpdist
fkiraly Nov 28, 2022
637d55a
Merge branch 'isolate_numba' into numba_softdep
fkiraly Nov 28, 2022
c2f9fe4
catch22
fkiraly Nov 28, 2022
cc16309
Merge branch 'isolate_numba' into numba_softdep
fkiraly Nov 28, 2022
a8abb9c
linting
fkiraly Nov 28, 2022
9e55fd7
Merge branch 'isolate_numba' into numba_softdep
fkiraly Nov 28, 2022
20f0b6c
sfa
fkiraly Nov 28, 2022
f32d2e3
Merge branch 'isolate_numba' into numba_softdep
fkiraly Nov 28, 2022
f50f385
linting
fkiraly Nov 28, 2022
bdca943
Merge branch 'isolate_numba' into numba_softdep
fkiraly Nov 28, 2022
f0b9157
typo
fkiraly Nov 28, 2022
7816c80
Merge branch 'isolate_numba' into numba_softdep
fkiraly Nov 28, 2022
97a1cc7
SFA tests
fkiraly Nov 28, 2022
00d46fd
typo-bug
fkiraly Nov 28, 2022
5f3353b
Merge branch 'isolate_numba' into numba_softdep
fkiraly Nov 28, 2022
3329e89
linting
fkiraly Nov 28, 2022
5ad1fc3
Merge branch 'isolate_numba' into numba_softdep
fkiraly Nov 28, 2022
13fc49f
fix test
fkiraly Nov 29, 2022
622f185
sfa_fast
fkiraly Nov 29, 2022
5bd5bbd
linting
fkiraly Nov 29, 2022
72422fe
Merge branch 'isolate_numba' into numba_softdep
fkiraly Nov 29, 2022
8fabf71
shapelet_transform
fkiraly Nov 29, 2022
a4d7f43
Merge branch 'isolate_numba' into numba_softdep
fkiraly Nov 29, 2022
c6f330c
clasp
fkiraly Nov 29, 2022
8a8ed8f
Merge branch 'isolate_numba' into numba_softdep
fkiraly Nov 29, 2022
04ca9f1
linting
fkiraly Nov 29, 2022
a2eabef
Merge branch 'isolate_numba' into numba_softdep
fkiraly Nov 29, 2022
4fbc3fa
shapelet_transform
fkiraly Nov 29, 2022
a127e3d
Merge branch 'isolate_numba' into numba_softdep
fkiraly Nov 29, 2022
659c1f4
isolate utils.numba
fkiraly Nov 29, 2022
affa39f
Merge branch 'isolate_numba' into numba_softdep
fkiraly Nov 29, 2022
5be2a37
minirocket
fkiraly Nov 29, 2022
df89765
multirocket_multivariate
fkiraly Nov 29, 2022
9063d1a
minirocket_multivariate
fkiraly Nov 29, 2022
8182626
Merge branch 'isolate_numba' into numba_softdep
fkiraly Nov 29, 2022
8a26f2a
Merge branch 'main' into numba_softdep
fkiraly Nov 29, 2022
a82a009
Merge branch 'main' into isolate_numba
fkiraly Nov 29, 2022
a95495d
minirocket_multivariate
fkiraly Nov 29, 2022
83fc99d
Merge branch 'isolate_numba' into numba_softdep
fkiraly Nov 29, 2022
b2edf66
SupervisedIntervals
fkiraly Nov 29, 2022
15f2ddd
RandomShapeletTransform
fkiraly Nov 29, 2022
5bd30b4
Merge branch 'isolate_numba' into numba_softdep
fkiraly Nov 29, 2022
eb8c0bf
SupervisedIntervals
fkiraly Nov 29, 2022
2f954ab
Merge branch 'isolate_numba' into numba_softdep
fkiraly Nov 29, 2022
619527e
Catch22Classifier
fkiraly Nov 29, 2022
0b95406
rename utils.numba
fkiraly Nov 29, 2022
80a1498
_numba link
fkiraly Nov 29, 2022
365e5e8
linting
fkiraly Nov 29, 2022
ba704a8
Merge branch 'isolate_numba' into numba_softdep
fkiraly Nov 29, 2022
a1d6084
test_check_estimator
fkiraly Nov 29, 2022
ef37d71
_numba locations
fkiraly Nov 29, 2022
3efa964
Merge branch 'isolate_numba' into numba_softdep
fkiraly Nov 29, 2022
597e575
private files, not folder
fkiraly Nov 29, 2022
f3bfc1b
Merge branch 'isolate_numba' into numba_softdep
fkiraly Nov 29, 2022
40f7bed
narrower softdeps collection
fkiraly Nov 29, 2022
fb02061
revert utils folders to original names
fkiraly Nov 29, 2022
9222acd
Merge branch 'isolate_numba' into numba_softdep
fkiraly Nov 29, 2022
74a44fd
typo
fkiraly Nov 29, 2022
a4e6fe2
revert imports
fkiraly Nov 29, 2022
6025827
Merge branch 'isolate_numba' into numba_softdep
fkiraly Nov 29, 2022
45c2208
ignore private packages in test_module_softdeps
fkiraly Nov 29, 2022
8cafc8e
SupervisedIntervals
fkiraly Nov 29, 2022
f12838a
WeightedEnsembleClassifier
fkiraly Nov 29, 2022
ce27230
ProbabilityThresholdEarlyClassifier
fkiraly Nov 29, 2022
be34c77
dependency tags
fkiraly Nov 29, 2022
15efadd
Merge branch 'isolate_numba' into numba_softdep
fkiraly Nov 29, 2022
70c8e30
fix check for private module
fkiraly Nov 29, 2022
adac262
Merge branch 'isolate_numba' into numba_softdep
fkiraly Nov 29, 2022
5a1b9d2
TEASER params
fkiraly Nov 29, 2022
5904211
RegressorPipeline params
fkiraly Nov 29, 2022
38e63eb
Merge branch 'isolate_numba' into numba_softdep
fkiraly Nov 29, 2022
52b7881
remaining dependency isolations
fkiraly Nov 29, 2022
ba799c2
Merge branch 'isolate_numba' into numba_softdep
fkiraly Nov 29, 2022
f3362c9
upgrade severity of module import warnings
fkiraly Nov 29, 2022
3cf047d
Merge branch 'isolate_numba' into numba_softdep
fkiraly Nov 29, 2022
faf2e97
error at start
fkiraly Nov 29, 2022
73de684
Merge branch 'isolate_numba' into numba_softdep
fkiraly Nov 29, 2022
1d6ec3a
utils.numba soft dependency register
fkiraly Nov 29, 2022
6d8e57e
Merge branch 'isolate_numba' into numba_softdep
fkiraly Nov 29, 2022
59b8c53
last _numba
fkiraly Nov 29, 2022
0952a5c
Merge branch 'isolate_numba' into numba_softdep
fkiraly Nov 29, 2022
2f9ce26
fix set_params
fkiraly Nov 30, 2022
78df1f7
fix merge accident
fkiraly Nov 30, 2022
7cd438d
Update _dummy.py
fkiraly Nov 30, 2022
024d288
Merge branch 'dummyclassif' into pipeline_set_params_fix
fkiraly Nov 30, 2022
1cb38f5
was this bug hallucinated?
fkiraly Nov 30, 2022
5351026
solve this by deep_equals
fkiraly Nov 30, 2022
bd0b1df
deal with class
fkiraly Nov 30, 2022
1638161
wrong equality sign
fkiraly Dec 1, 2022
7d18737
subset dict
fkiraly Dec 1, 2022
9e2e0b7
remove object equals
fkiraly Dec 1, 2022
afec96b
linting
fkiraly Dec 1, 2022
0c88f0a
linting
fkiraly Dec 1, 2022
d94fbf7
super call fix
fkiraly Dec 1, 2022
821db57
Merge branch 'main' into isolate_numba
fkiraly Dec 1, 2022
3f17833
Merge branch 'pipeline_set_params_fix' into isolate_numba
fkiraly Dec 1, 2022
91780b0
Merge branch 'isolate_numba' into numba_softdep
fkiraly Dec 1, 2022
fc99df6
Merge branch 'main' into isolate_numba
fkiraly Dec 18, 2022
e914381
dummy njit for isolation
fkiraly Dec 18, 2022
3a23da4
Merge branch 'isolate_numba' into numba_softdep
fkiraly Dec 18, 2022
d78d163
linting
fkiraly Dec 18, 2022
a46ec65
Merge branch 'isolate_numba' into numba_softdep
fkiraly Dec 18, 2022
90fadd6
njit dispatcher in numba utils
fkiraly Dec 19, 2022
6f76e14
Merge branch 'isolate_numba' into numba_softdep
fkiraly Dec 19, 2022
9394267
linting
fkiraly Dec 19, 2022
dc1af9e
Merge branch 'isolate_numba' into numba_softdep
fkiraly Dec 19, 2022
8984177
Merge branch 'main' into numba_softdep
fkiraly Dec 25, 2022
98febc1
Merge branch 'main' into isolate_numba
fkiraly Dec 25, 2022
9c5d090
Merge branch 'isolate_numba' into numba_softdep
fkiraly Dec 25, 2022
4193d49
typo
fkiraly Dec 25, 2022
ccfa22f
Merge branch 'isolate_numba' into numba_softdep
fkiraly Dec 25, 2022
8fce1c9
replaced numba njit import by sktime dispatcher
fkiraly Dec 25, 2022
d9e4fa2
linting
fkiraly Dec 25, 2022
2219aea
Merge branch 'isolate_numba' into numba_softdep
fkiraly Dec 25, 2022
f669500
Merge branch 'main' into isolate_numba
fkiraly Dec 26, 2022
8592d00
calls to vectorize
fkiraly Dec 26, 2022
3bf79b1
Merge branch 'isolate_numba' into numba_softdep
fkiraly Dec 26, 2022
93f5a56
sfa_fast
fkiraly Dec 26, 2022
6667bb0
replace catch22 by dummy
fkiraly Dec 26, 2022
abec69a
rocket tests
fkiraly Dec 26, 2022
b06cbad
tests cont
fkiraly Dec 26, 2022
e2ba875
rise & jit
fkiraly Dec 26, 2022
c775105
sktime compatibility
fkiraly Dec 26, 2022
23f5b48
shapelet transform
fkiraly Dec 26, 2022
536ef63
distances
fkiraly Dec 26, 2022
962a7b0
linting
fkiraly Dec 26, 2022
bbd8a9d
distances
fkiraly Dec 26, 2022
34cfb0b
clasp tests
fkiraly Dec 26, 2022
7b1f685
stc
fkiraly Dec 26, 2022
431db4b
sfa tests
fkiraly Dec 26, 2022
203f37c
Merge branch 'isolate_numba' into numba_softdep
fkiraly Dec 26, 2022
6a9b765
linting
fkiraly Dec 26, 2022
e2725f6
Merge branch 'isolate_numba' into numba_softdep
fkiraly Dec 26, 2022
1b51417
fix bad import
fkiraly Dec 26, 2022
234b7e0
Merge branch 'isolate_numba' into numba_softdep
fkiraly Dec 26, 2022
8ef8117
handle composite_estimators
fkiraly Dec 26, 2022
94f07d0
teaser
fkiraly Dec 26, 2022
e9a4cd3
alignments
fkiraly Dec 26, 2022
e941df2
supervised and random intervals tests
fkiraly Dec 26, 2022
5fdbe94
catch22
fkiraly Dec 26, 2022
c5ff977
clasp doctest
fkiraly Dec 26, 2022
436e1b8
columnensembleclassifier doctest
fkiraly Dec 26, 2022
ef2df71
Merge branch 'isolate_numba' into numba_softdep
fkiraly Dec 26, 2022
32403ef
remaining tests
fkiraly Dec 26, 2022
f928bc2
Merge branch 'isolate_numba' into numba_softdep
fkiraly Dec 26, 2022
1cc47be
doctest skips
fkiraly Dec 26, 2022
032a6eb
doctest skips
fkiraly Dec 26, 2022
4f0341a
Merge branch 'isolate_numba' into numba_softdep
fkiraly Dec 26, 2022
924f4df
linting pyproject
fkiraly Dec 26, 2022
2f152b0
rocket
fkiraly Dec 26, 2022
f3fc742
Merge branch 'isolate_numba' into numba_softdep
fkiraly Dec 26, 2022
18155d4
handle test_classifier_on_ construction
fkiraly Dec 27, 2022
ead70a6
Merge branch 'isolate_numba' into numba_softdep
fkiraly Dec 27, 2022
dba3333
Merge branch 'main' into isolate_numba
fkiraly Dec 27, 2022
3808f9d
Merge branch 'isolate_numba' into numba_softdep
fkiraly Dec 27, 2022
8743210
Merge branch 'main' into numba_softdep
fkiraly Feb 23, 2023
935f2b9
Merge branch 'main' into numba_softdep
fkiraly Apr 24, 2023
66d4f03
typo
fkiraly Apr 24, 2023
90f9fc6
Merge branch 'main' into numba_softdep
fkiraly Apr 24, 2023
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2 changes: 1 addition & 1 deletion pyproject.toml
Expand Up @@ -45,7 +45,6 @@ classifiers = [
requires-python = ">=3.7,<3.12"
dependencies = [
"deprecated>=1.2.13",
"numba>=0.53; python_version < '3.11'",
"numpy>=1.21.0,<1.25",
"pandas>=1.1.0,<2.0.0",
"scikit-learn>=0.24.0,<1.3.0",
Expand All @@ -68,6 +67,7 @@ all_extras = [
"kotsu>=0.3.1",
"matplotlib>=3.3.2",
"mne",
"numba>=0.53; python_version < '3.11'",
"pmdarima>=1.8.0,!=1.8.1,<3.0.0",
"prophet>=1.1",
"pykalman>=0.9.5; python_version < '3.11'",
Expand Down