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Fixed bug
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ekmolloy committed Feb 1, 2021
1 parent 2e3c0a7 commit 5a3cc5d
Showing 1 changed file with 1 addition and 1 deletion.
2 changes: 1 addition & 1 deletion sepp/metagenomics.py
Original file line number Diff line number Diff line change
Expand Up @@ -784,7 +784,7 @@ def blast_fragments(input, output):
output'''
global refpkg

blastn = options().__getattribute__('blastn').path
blastn = options().__getattribute__('blast').path

cmd = blastn + " -db " + refpkg["blast"]["database"] \
+ " -outfmt \"6" \
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