Hacks to move to dendropy 4

[smirarab]

From Erin:

#from dendropy import convert_node_to_root_polytomy

from dendropy.datamodel.treemodel import _convert_node_to_root_polytomy as convert_node_to_root_polytomy

[MGNute]

Can I close this issue since we have a (I think) working version with DP4 now?

[smirarab]

Yes, closing with e4b4753

[kibet-gilbert]

How were you able to handle the incompatibility of SATe with recent versions of Dendropy?

I have been advised to use older Versions preferably 3.12.0 which brings up installation issues.
Read this thread for more information: Problem while executing $ python2 run_sate.py incompatibility with current version of dendropy

Can i possibly use your solution to get my SATe running?

[smirarab]

There were several changes, that can be seen here: e4b4753 Hope this helps!

…

On Mon, Nov 19, 2018 at 1:36 AM Kibet Gilbert ***@***.***> wrote: How were you able to handle the incompatibility of SATe with recent versions of Dendropy? I have been advised to use older Versions preferably 3.12.0 which brings up installation issues. Read this thread for more information: Problem while executing $ python2 run_sate.py incompatibility with current version of dendropy <sate-dev/sate-core#38> Can i possibly use your solution to get my SATe running? — You are receiving this because you modified the open/close state. Reply to this email directly, view it on GitHub <#13 (comment)>, or mute the thread <https://github.com/notifications/unsubscribe-auth/AAybuJdbzILqc8S6COkkCuwPYBhQ1Y4Xks5uwnuogaJpZM4Ghiry> .

-- Siavash Mirarab