MSFileReader 3.0 SP2 installation requires that both standalone and merged versions be installed #1300
Comments
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Hello! I tried:
I'll add a little note in the readme in the event that future new users encounter this issue. |
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Very strange - thanks for the report. Hopefully this will help others with this problem. |
rmillikin
added a commit
that referenced
this issue
Jul 24, 2018
* fix installer issue that caused metamorpheus to not open (#1288) * Update to mzlib 328 (#1285) * Update mzlib * Revert "Update mzlib" This reverts commit 1b3fa4f. * update mzlib * Non tomls (#1284) * test * test remove * Added column of matched intensity values * FIXED: intensitiy count for comp ions * Revisons to Intensity column add * Fixed reassign non-specific maxpeptide length * Remove conflic marker * Delete line * Change to for loops (readability) * update mzLib; fix bug in displaying matched ion info (#1292) * Smaller refactor to common parameters * Make maxThreadsPerFile privately set * FDR Filtering Prior to Protein Parsimony (#1296) * Fix all merge errors * Merge and Merge Fixes * edits * fixed issue * remove test code * brackets * Codacy Edits * rob edits * rob edit 2 * MBR with multiple proteases, has errors becasue mzLib method not yet incorporated * Make Parsimony only take into account 1% or better FDR peptides * removed regions * Fdr filtereing done with peptide with set mods accessed from psms after mathcing, before parsimony * FdrFiltering With Psms * FDR Filtering PSMs prior to parsimony * remove test code * removing extra spaces between lines * Camel Case Changes * relocate FDR filtering code to only occur if user performs parsimony * 1% and below PSMs assigned to parsimony proteins * Index out of bounds indexing engine fix (#1299) * Include troubleshooting for MSFileReader Address issue #1300 * fix "cumulative target" skipping numbers (#1302) * fix decoy skipping (#1303) * fix "cumulative target" skipping numbers * fix decoy skipping * File specific overwrote all other parameters to default (#1305) * File specific parameter overwrite fix * Remove clone * Remove useless note * remove useless resources * Revert "Remove clone" This reverts commit a706a4f. * Small fix ensures that crashes in entering indistinguishable proteins are handled (#1307) * Fix all merge errors * Merge and Merge Fixes * edits * fixed issue * remove test code * brackets * Codacy Edits * rob edits * rob edit 2 * MBR with multiple proteases, has errors becasue mzLib method not yet incorporated * Make Parsimony only take into account 1% or better FDR peptides * removed regions * Fdr filtereing done with peptide with set mods accessed from psms after mathcing, before parsimony * FdrFiltering With Psms * FDR Filtering PSMs prior to parsimony * remove test code * removing extra spaces between lines * Camel Case Changes * relocate FDR filtering code to only occur if user performs parsimony * 1% and below PSMs assigned to parsimony proteins * Fix with indistiguishable proteins. Ensuring that proteins not already present in the protein parsimony list * Update ProteinParsimonyEngine.cs
rmillikin
added a commit
that referenced
this issue
Jul 24, 2018
* 285 (#1294) * fix installer issue that caused metamorpheus to not open (#1288) * Update to mzlib 328 (#1285) * Update mzlib * Revert "Update mzlib" This reverts commit 1b3fa4f. * update mzlib * Non tomls (#1284) * test * test remove * Added column of matched intensity values * FIXED: intensitiy count for comp ions * Revisons to Intensity column add * Fixed reassign non-specific maxpeptide length * Remove conflic marker * Delete line * Change to for loops (readability) * update mzLib; fix bug in displaying matched ion info (#1292) * File specific overwrote all other parameters to default (#1305) * File specific parameter overwrite fix * Remove clone * Remove useless note * remove useless resources * Revert "Remove clone" This reverts commit a706a4f. * Small fix ensures that crashes in entering indistinguishable proteins are handled (#1307) * Fix all merge errors * Merge and Merge Fixes * edits * fixed issue * remove test code * brackets * Codacy Edits * rob edits * rob edit 2 * MBR with multiple proteases, has errors becasue mzLib method not yet incorporated * Make Parsimony only take into account 1% or better FDR peptides * removed regions * Fdr filtereing done with peptide with set mods accessed from psms after mathcing, before parsimony * FdrFiltering With Psms * FDR Filtering PSMs prior to parsimony * remove test code * removing extra spaces between lines * Camel Case Changes * relocate FDR filtering code to only occur if user performs parsimony * 1% and below PSMs assigned to parsimony proteins * Fix with indistiguishable proteins. Ensuring that proteins not already present in the protein parsimony list * Update ProteinParsimonyEngine.cs * 286 (#1312) * fix installer issue that caused metamorpheus to not open (#1288) * Update to mzlib 328 (#1285) * Update mzlib * Revert "Update mzlib" This reverts commit 1b3fa4f. * update mzlib * Non tomls (#1284) * test * test remove * Added column of matched intensity values * FIXED: intensitiy count for comp ions * Revisons to Intensity column add * Fixed reassign non-specific maxpeptide length * Remove conflic marker * Delete line * Change to for loops (readability) * update mzLib; fix bug in displaying matched ion info (#1292) * Smaller refactor to common parameters * Make maxThreadsPerFile privately set * FDR Filtering Prior to Protein Parsimony (#1296) * Fix all merge errors * Merge and Merge Fixes * edits * fixed issue * remove test code * brackets * Codacy Edits * rob edits * rob edit 2 * MBR with multiple proteases, has errors becasue mzLib method not yet incorporated * Make Parsimony only take into account 1% or better FDR peptides * removed regions * Fdr filtereing done with peptide with set mods accessed from psms after mathcing, before parsimony * FdrFiltering With Psms * FDR Filtering PSMs prior to parsimony * remove test code * removing extra spaces between lines * Camel Case Changes * relocate FDR filtering code to only occur if user performs parsimony * 1% and below PSMs assigned to parsimony proteins * Index out of bounds indexing engine fix (#1299) * Include troubleshooting for MSFileReader Address issue #1300 * fix "cumulative target" skipping numbers (#1302) * fix decoy skipping (#1303) * fix "cumulative target" skipping numbers * fix decoy skipping * File specific overwrote all other parameters to default (#1305) * File specific parameter overwrite fix * Remove clone * Remove useless note * remove useless resources * Revert "Remove clone" This reverts commit a706a4f. * Small fix ensures that crashes in entering indistinguishable proteins are handled (#1307) * Fix all merge errors * Merge and Merge Fixes * edits * fixed issue * remove test code * brackets * Codacy Edits * rob edits * rob edit 2 * MBR with multiple proteases, has errors becasue mzLib method not yet incorporated * Make Parsimony only take into account 1% or better FDR peptides * removed regions * Fdr filtereing done with peptide with set mods accessed from psms after mathcing, before parsimony * FdrFiltering With Psms * FDR Filtering PSMs prior to parsimony * remove test code * removing extra spaces between lines * Camel Case Changes * relocate FDR filtering code to only occur if user performs parsimony * 1% and below PSMs assigned to parsimony proteins * Fix with indistiguishable proteins. Ensuring that proteins not already present in the protein parsimony list * Update ProteinParsimonyEngine.cs * MetaMorpheus Add for maxThreads in MzLib change (#1310) * MetaMorpheus Add for maxThreads in MzLib change * Added maxThreads for different methods * MaxThread method add * Rob's MetaDraw... (#1306) * OutputNoice * haha * aha * uhum * hmph * Noice * Fixes * version check * 205 with auto_update * added features * Auto_Update * installer updated * Aha * Yah * Uhum * uhum * Wooh * revert * minor * uhum * Remove unused * noice * noice * codemaid * Yah * Cleaner * noice * hm * installer * installer * checkbox * Added Unimod Menu Bar * added features: installer, do_not_remind and Update Unimods * remove weird * weird * hm * hm * Cleaned up * add settings * add modslocation * Git final * restore * plz solve conflict * fied indent * Violent installer * indenting fixed * A Decent Installer * Fix menu option * Simplify updater * Update Product.wxs * Debug travis * Gah * Environment.GetFolderPath(Environment.SpecialFolder.ProgramFiles) * yah * Noice * Simplify * datadir menu option * Updated to Origin * MetaUpdater Added release notes * Meta Updater * Cleanup * clean_up and Update * desktop sc * package code fix * commented with Codacy checked errors and warnings on Codacy. All minor things. * Update TestScan.cs * fix * Update TestScan.cs * Update TestScan.cs * Large file test command backup * Update command * okay * Fix a few * Mkay * Update to Curr -- Appveyor * Set to release * Added Encrypted Cert * Update appveyor.yml * Update appveyor.yml * Update appveyor.yml * Update appveyor.yml * Update appveyor.yml * Update appveyor.yml * Update appveyor.yml * Update appveyor.yml * Update appveyor.yml * Update appveyor.yml * Update appveyor.yml * Update * update * Update CalibrationTask.cs * Update CalibrationTask.cs * yah * Bootstraper * cleanup * sln fix * bootin * Update MetaMorpheus.sln * Update MetaMorpheus.sln * bundle compile * Update MetaMorpheus.sln * Uhum * Hmhp * aha * fixup * yeah * yeah * update to upstream * XL Different crosslink sites * XL crosslink different amino acid GUI * XL Improve codeCov * XL Improve CodeCov2 * XL test Target 90% coverage * XLTest Target 90% coverage2 * XLTest Target 90% coverage3 * XL pep.XML mod position N ter refer as 0 * XL test diff crosslink site * Optimize xltest code * XL improve code quality * XL GenerateIntensityRanks() bug * Output pep.XML for Search Task * pepXML works for Search Task * pep.xml works for TPP now! * pep.xml Search Engine Tandom * Update pep.XML * PepXML update * PepXMLWriter Class * Remove useless library pepxml * Add Quantification Setting Window * QuanSetGUI * Start RealTime GUI project * Data Collect * Connection bug * Notification Event * Updata DataReceiver Notification * Dispatcher BeginInvoke * Add MetaDraw into MetaMorpheus * MetaDraw using MsDataFile * Data Receiver by TbNotification * Add Realtime database * dd * clear * cleanup dd * RealTime add parameter * Success generate ion index for real time * Check Thread * Add log4net * log in DataReceiver * DataReceiver cannot have logWatcher * Try BeginInvoke * LogWatcher BeginInvoke * Add Notification * Add Dump * check Notification 2nd * try DataReceiver.Notifications * metadraw * no sense * sync * Update Installer * MetaDraw update Product ions parameter * Update SpectrumForDataGrid * Update * MetaDraw Added * Fix Pull * MetaDraw Added * updates * MetaDraw * try to build * try to build 2 * metadraw edits * use established peptide classes to get fragments; graphical improvements; other code improvements * revamp interface
rmillikin
added a commit
that referenced
this issue
Jul 24, 2018
* rev (#1316) * 285 (#1294) * fix installer issue that caused metamorpheus to not open (#1288) * Update to mzlib 328 (#1285) * Update mzlib * Revert "Update mzlib" This reverts commit 1b3fa4f. * update mzlib * Non tomls (#1284) * test * test remove * Added column of matched intensity values * FIXED: intensitiy count for comp ions * Revisons to Intensity column add * Fixed reassign non-specific maxpeptide length * Remove conflic marker * Delete line * Change to for loops (readability) * update mzLib; fix bug in displaying matched ion info (#1292) * File specific overwrote all other parameters to default (#1305) * File specific parameter overwrite fix * Remove clone * Remove useless note * remove useless resources * Revert "Remove clone" This reverts commit a706a4f. * Small fix ensures that crashes in entering indistinguishable proteins are handled (#1307) * Fix all merge errors * Merge and Merge Fixes * edits * fixed issue * remove test code * brackets * Codacy Edits * rob edits * rob edit 2 * MBR with multiple proteases, has errors becasue mzLib method not yet incorporated * Make Parsimony only take into account 1% or better FDR peptides * removed regions * Fdr filtereing done with peptide with set mods accessed from psms after mathcing, before parsimony * FdrFiltering With Psms * FDR Filtering PSMs prior to parsimony * remove test code * removing extra spaces between lines * Camel Case Changes * relocate FDR filtering code to only occur if user performs parsimony * 1% and below PSMs assigned to parsimony proteins * Fix with indistiguishable proteins. Ensuring that proteins not already present in the protein parsimony list * Update ProteinParsimonyEngine.cs * 286 (#1312) * fix installer issue that caused metamorpheus to not open (#1288) * Update to mzlib 328 (#1285) * Update mzlib * Revert "Update mzlib" This reverts commit 1b3fa4f. * update mzlib * Non tomls (#1284) * test * test remove * Added column of matched intensity values * FIXED: intensitiy count for comp ions * Revisons to Intensity column add * Fixed reassign non-specific maxpeptide length * Remove conflic marker * Delete line * Change to for loops (readability) * update mzLib; fix bug in displaying matched ion info (#1292) * Smaller refactor to common parameters * Make maxThreadsPerFile privately set * FDR Filtering Prior to Protein Parsimony (#1296) * Fix all merge errors * Merge and Merge Fixes * edits * fixed issue * remove test code * brackets * Codacy Edits * rob edits * rob edit 2 * MBR with multiple proteases, has errors becasue mzLib method not yet incorporated * Make Parsimony only take into account 1% or better FDR peptides * removed regions * Fdr filtereing done with peptide with set mods accessed from psms after mathcing, before parsimony * FdrFiltering With Psms * FDR Filtering PSMs prior to parsimony * remove test code * removing extra spaces between lines * Camel Case Changes * relocate FDR filtering code to only occur if user performs parsimony * 1% and below PSMs assigned to parsimony proteins * Index out of bounds indexing engine fix (#1299) * Include troubleshooting for MSFileReader Address issue #1300 * fix "cumulative target" skipping numbers (#1302) * fix decoy skipping (#1303) * fix "cumulative target" skipping numbers * fix decoy skipping * File specific overwrote all other parameters to default (#1305) * File specific parameter overwrite fix * Remove clone * Remove useless note * remove useless resources * Revert "Remove clone" This reverts commit a706a4f. * Small fix ensures that crashes in entering indistinguishable proteins are handled (#1307) * Fix all merge errors * Merge and Merge Fixes * edits * fixed issue * remove test code * brackets * Codacy Edits * rob edits * rob edit 2 * MBR with multiple proteases, has errors becasue mzLib method not yet incorporated * Make Parsimony only take into account 1% or better FDR peptides * removed regions * Fdr filtereing done with peptide with set mods accessed from psms after mathcing, before parsimony * FdrFiltering With Psms * FDR Filtering PSMs prior to parsimony * remove test code * removing extra spaces between lines * Camel Case Changes * relocate FDR filtering code to only occur if user performs parsimony * 1% and below PSMs assigned to parsimony proteins * Fix with indistiguishable proteins. Ensuring that proteins not already present in the protein parsimony list * Update ProteinParsimonyEngine.cs * MetaMorpheus Add for maxThreads in MzLib change (#1310) * MetaMorpheus Add for maxThreads in MzLib change * Added maxThreads for different methods * MaxThread method add * Rob's MetaDraw... (#1306) * OutputNoice * haha * aha * uhum * hmph * Noice * Fixes * version check * 205 with auto_update * added features * Auto_Update * installer updated * Aha * Yah * Uhum * uhum * Wooh * revert * minor * uhum * Remove unused * noice * noice * codemaid * Yah * Cleaner * noice * hm * installer * installer * checkbox * Added Unimod Menu Bar * added features: installer, do_not_remind and Update Unimods * remove weird * weird * hm * hm * Cleaned up * add settings * add modslocation * Git final * restore * plz solve conflict * fied indent * Violent installer * indenting fixed * A Decent Installer * Fix menu option * Simplify updater * Update Product.wxs * Debug travis * Gah * Environment.GetFolderPath(Environment.SpecialFolder.ProgramFiles) * yah * Noice * Simplify * datadir menu option * Updated to Origin * MetaUpdater Added release notes * Meta Updater * Cleanup * clean_up and Update * desktop sc * package code fix * commented with Codacy checked errors and warnings on Codacy. All minor things. * Update TestScan.cs * fix * Update TestScan.cs * Update TestScan.cs * Large file test command backup * Update command * okay * Fix a few * Mkay * Update to Curr -- Appveyor * Set to release * Added Encrypted Cert * Update appveyor.yml * Update appveyor.yml * Update appveyor.yml * Update appveyor.yml * Update appveyor.yml * Update appveyor.yml * Update appveyor.yml * Update appveyor.yml * Update appveyor.yml * Update appveyor.yml * Update appveyor.yml * Update * update * Update CalibrationTask.cs * Update CalibrationTask.cs * yah * Bootstraper * cleanup * sln fix * bootin * Update MetaMorpheus.sln * Update MetaMorpheus.sln * bundle compile * Update MetaMorpheus.sln * Uhum * Hmhp * aha * fixup * yeah * yeah * update to upstream * XL Different crosslink sites * XL crosslink different amino acid GUI * XL Improve codeCov * XL Improve CodeCov2 * XL test Target 90% coverage * XLTest Target 90% coverage2 * XLTest Target 90% coverage3 * XL pep.XML mod position N ter refer as 0 * XL test diff crosslink site * Optimize xltest code * XL improve code quality * XL GenerateIntensityRanks() bug * Output pep.XML for Search Task * pepXML works for Search Task * pep.xml works for TPP now! * pep.xml Search Engine Tandom * Update pep.XML * PepXML update * PepXMLWriter Class * Remove useless library pepxml * Add Quantification Setting Window * QuanSetGUI * Start RealTime GUI project * Data Collect * Connection bug * Notification Event * Updata DataReceiver Notification * Dispatcher BeginInvoke * Add MetaDraw into MetaMorpheus * MetaDraw using MsDataFile * Data Receiver by TbNotification * Add Realtime database * dd * clear * cleanup dd * RealTime add parameter * Success generate ion index for real time * Check Thread * Add log4net * log in DataReceiver * DataReceiver cannot have logWatcher * Try BeginInvoke * LogWatcher BeginInvoke * Add Notification * Add Dump * check Notification 2nd * try DataReceiver.Notifications * metadraw * no sense * sync * Update Installer * MetaDraw update Product ions parameter * Update SpectrumForDataGrid * Update * MetaDraw Added * Fix Pull * MetaDraw Added * updates * MetaDraw * try to build * try to build 2 * metadraw edits * use established peptide classes to get fragments; graphical improvements; other code improvements * revamp interface * oops
rmillikin
added a commit
that referenced
this issue
Aug 15, 2018
* installer * checkbox * Added Unimod Menu Bar * added features: installer, do_not_remind and Update Unimods * remove weird * weird * hm * hm * Cleaned up * add settings * add modslocation * Git final * restore * plz solve conflict * fied indent * Violent installer * indenting fixed * A Decent Installer * Fix menu option * Simplify updater * Update Product.wxs * Debug travis * Gah * Environment.GetFolderPath(Environment.SpecialFolder.ProgramFiles) * yah * Noice * Simplify * datadir menu option * Updated to Origin * MetaUpdater Added release notes * Meta Updater * Cleanup * clean_up and Update * desktop sc * package code fix * commented with Codacy checked errors and warnings on Codacy. All minor things. * Update TestScan.cs * fix * Update TestScan.cs * Update TestScan.cs * Large file test command backup * Update command * okay * Fix a few * Mkay * Update to Curr -- Appveyor * Set to release * Added Encrypted Cert * Update appveyor.yml * Update appveyor.yml * Update appveyor.yml * Update appveyor.yml * Update appveyor.yml * Update appveyor.yml * Update appveyor.yml * Update appveyor.yml * Update appveyor.yml * Update appveyor.yml * Update appveyor.yml * Update * update * Update CalibrationTask.cs * Update CalibrationTask.cs * yah * Bootstraper * cleanup * sln fix * bootin * Update MetaMorpheus.sln * Update MetaMorpheus.sln * bundle compile * Update MetaMorpheus.sln * Uhum * Hmhp * aha * fixup * yeah * yeah * update to upstream * XL Different crosslink sites * XL crosslink different amino acid GUI * XL Improve codeCov * XL Improve CodeCov2 * XL test Target 90% coverage * XLTest Target 90% coverage2 * XLTest Target 90% coverage3 * XL pep.XML mod position N ter refer as 0 * XL test diff crosslink site * Optimize xltest code * XL improve code quality * XL GenerateIntensityRanks() bug * Output pep.XML for Search Task * pepXML works for Search Task * pep.xml works for TPP now! * pep.xml Search Engine Tandom * Update pep.XML * PepXML update * PepXMLWriter Class * Remove useless library pepxml * Add Quantification Setting Window * QuanSetGUI * Start RealTime GUI project * Data Collect * Connection bug * Notification Event * Updata DataReceiver Notification * Dispatcher BeginInvoke * Add MetaDraw into MetaMorpheus * MetaDraw using MsDataFile * Data Receiver by TbNotification * Add Realtime database * dd * clear * cleanup dd * RealTime add parameter * Success generate ion index for real time * Check Thread * Add log4net * log in DataReceiver * DataReceiver cannot have logWatcher * Try BeginInvoke * LogWatcher BeginInvoke * Add Notification * Add Dump * check Notification 2nd * try DataReceiver.Notifications * metadraw * no sense * sync * Update Installer * MetaDraw update Product ions parameter * Update SpectrumForDataGrid * Update * MetaDraw Added * Fix Pull * MetaDraw Added * fix installer issue that caused metamorpheus to not open (#1288) * Update to mzlib 328 (#1285) * Update mzlib * Revert "Update mzlib" This reverts commit 1b3fa4f. * update mzlib * Non tomls (#1284) * test * test remove * Added column of matched intensity values * FIXED: intensitiy count for comp ions * Revisons to Intensity column add * Fixed reassign non-specific maxpeptide length * Remove conflic marker * Delete line * Change to for loops (readability) * update mzLib; fix bug in displaying matched ion info (#1292) * Smaller refactor to common parameters * Make maxThreadsPerFile privately set * FDR Filtering Prior to Protein Parsimony (#1296) * Fix all merge errors * Merge and Merge Fixes * edits * fixed issue * remove test code * brackets * Codacy Edits * rob edits * rob edit 2 * MBR with multiple proteases, has errors becasue mzLib method not yet incorporated * Make Parsimony only take into account 1% or better FDR peptides * removed regions * Fdr filtereing done with peptide with set mods accessed from psms after mathcing, before parsimony * FdrFiltering With Psms * FDR Filtering PSMs prior to parsimony * remove test code * removing extra spaces between lines * Camel Case Changes * relocate FDR filtering code to only occur if user performs parsimony * 1% and below PSMs assigned to parsimony proteins * Index out of bounds indexing engine fix (#1299) * Include troubleshooting for MSFileReader Address issue #1300 * fix "cumulative target" skipping numbers (#1302) * fix decoy skipping (#1303) * fix "cumulative target" skipping numbers * fix decoy skipping * updates * MetaDraw * try to build * try to build 2 * metadraw edits * File specific overwrote all other parameters to default (#1305) * File specific parameter overwrite fix * Remove clone * Remove useless note * remove useless resources * Revert "Remove clone" This reverts commit a706a4f. * Small fix ensures that crashes in entering indistinguishable proteins are handled (#1307) * Fix all merge errors * Merge and Merge Fixes * edits * fixed issue * remove test code * brackets * Codacy Edits * rob edits * rob edit 2 * MBR with multiple proteases, has errors becasue mzLib method not yet incorporated * Make Parsimony only take into account 1% or better FDR peptides * removed regions * Fdr filtereing done with peptide with set mods accessed from psms after mathcing, before parsimony * FdrFiltering With Psms * FDR Filtering PSMs prior to parsimony * remove test code * removing extra spaces between lines * Camel Case Changes * relocate FDR filtering code to only occur if user performs parsimony * 1% and below PSMs assigned to parsimony proteins * Fix with indistiguishable proteins. Ensuring that proteins not already present in the protein parsimony list * Update ProteinParsimonyEngine.cs * use established peptide classes to get fragments; graphical improvements; other code improvements * MetaMorpheus Add for maxThreads in MzLib change (#1310) * MetaMorpheus Add for maxThreads in MzLib change * Added maxThreads for different methods * MaxThread method add * revamp interface * Rob's MetaDraw... (#1306) * OutputNoice * haha * aha * uhum * hmph * Noice * Fixes * version check * 205 with auto_update * added features * Auto_Update * installer updated * Aha * Yah * Uhum * uhum * Wooh * revert * minor * uhum * Remove unused * noice * noice * codemaid * Yah * Cleaner * noice * hm * installer * installer * checkbox * Added Unimod Menu Bar * added features: installer, do_not_remind and Update Unimods * remove weird * weird * hm * hm * Cleaned up * add settings * add modslocation * Git final * restore * plz solve conflict * fied indent * Violent installer * indenting fixed * A Decent Installer * Fix menu option * Simplify updater * Update Product.wxs * Debug travis * Gah * Environment.GetFolderPath(Environment.SpecialFolder.ProgramFiles) * yah * Noice * Simplify * datadir menu option * Updated to Origin * MetaUpdater Added release notes * Meta Updater * Cleanup * clean_up and Update * desktop sc * package code fix * commented with Codacy checked errors and warnings on Codacy. All minor things. * Update TestScan.cs * fix * Update TestScan.cs * Update TestScan.cs * Large file test command backup * Update command * okay * Fix a few * Mkay * Update to Curr -- Appveyor * Set to release * Added Encrypted Cert * Update appveyor.yml * Update appveyor.yml * Update appveyor.yml * Update appveyor.yml * Update appveyor.yml * Update appveyor.yml * Update appveyor.yml * Update appveyor.yml * Update appveyor.yml * Update appveyor.yml * Update appveyor.yml * Update * update * Update CalibrationTask.cs * Update CalibrationTask.cs * yah * Bootstraper * cleanup * sln fix * bootin * Update MetaMorpheus.sln * Update MetaMorpheus.sln * bundle compile * Update MetaMorpheus.sln * Uhum * Hmhp * aha * fixup * yeah * yeah * update to upstream * XL Different crosslink sites * XL crosslink different amino acid GUI * XL Improve codeCov * XL Improve CodeCov2 * XL test Target 90% coverage * XLTest Target 90% coverage2 * XLTest Target 90% coverage3 * XL pep.XML mod position N ter refer as 0 * XL test diff crosslink site * Optimize xltest code * XL improve code quality * XL GenerateIntensityRanks() bug * Output pep.XML for Search Task * pepXML works for Search Task * pep.xml works for TPP now! * pep.xml Search Engine Tandom * Update pep.XML * PepXML update * PepXMLWriter Class * Remove useless library pepxml * Add Quantification Setting Window * QuanSetGUI * Start RealTime GUI project * Data Collect * Connection bug * Notification Event * Updata DataReceiver Notification * Dispatcher BeginInvoke * Add MetaDraw into MetaMorpheus * MetaDraw using MsDataFile * Data Receiver by TbNotification * Add Realtime database * dd * clear * cleanup dd * RealTime add parameter * Success generate ion index for real time * Check Thread * Add log4net * log in DataReceiver * DataReceiver cannot have logWatcher * Try BeginInvoke * LogWatcher BeginInvoke * Add Notification * Add Dump * check Notification 2nd * try DataReceiver.Notifications * metadraw * no sense * sync * Update Installer * MetaDraw update Product ions parameter * Update SpectrumForDataGrid * Update * MetaDraw Added * Fix Pull * MetaDraw Added * updates * MetaDraw * try to build * try to build 2 * metadraw edits * use established peptide classes to get fragments; graphical improvements; other code improvements * revamp interface * fix file loading in metadraw (#1317) * rev (#1316) * 285 (#1294) * fix installer issue that caused metamorpheus to not open (#1288) * Update to mzlib 328 (#1285) * Update mzlib * Revert "Update mzlib" This reverts commit 1b3fa4f. * update mzlib * Non tomls (#1284) * test * test remove * Added column of matched intensity values * FIXED: intensitiy count for comp ions * Revisons to Intensity column add * Fixed reassign non-specific maxpeptide length * Remove conflic marker * Delete line * Change to for loops (readability) * update mzLib; fix bug in displaying matched ion info (#1292) * File specific overwrote all other parameters to default (#1305) * File specific parameter overwrite fix * Remove clone * Remove useless note * remove useless resources * Revert "Remove clone" This reverts commit a706a4f. * Small fix ensures that crashes in entering indistinguishable proteins are handled (#1307) * Fix all merge errors * Merge and Merge Fixes * edits * fixed issue * remove test code * brackets * Codacy Edits * rob edits * rob edit 2 * MBR with multiple proteases, has errors becasue mzLib method not yet incorporated * Make Parsimony only take into account 1% or better FDR peptides * removed regions * Fdr filtereing done with peptide with set mods accessed from psms after mathcing, before parsimony * FdrFiltering With Psms * FDR Filtering PSMs prior to parsimony * remove test code * removing extra spaces between lines * Camel Case Changes * relocate FDR filtering code to only occur if user performs parsimony * 1% and below PSMs assigned to parsimony proteins * Fix with indistiguishable proteins. Ensuring that proteins not already present in the protein parsimony list * Update ProteinParsimonyEngine.cs * 286 (#1312) * fix installer issue that caused metamorpheus to not open (#1288) * Update to mzlib 328 (#1285) * Update mzlib * Revert "Update mzlib" This reverts commit 1b3fa4f. * update mzlib * Non tomls (#1284) * test * test remove * Added column of matched intensity values * FIXED: intensitiy count for comp ions * Revisons to Intensity column add * Fixed reassign non-specific maxpeptide length * Remove conflic marker * Delete line * Change to for loops (readability) * update mzLib; fix bug in displaying matched ion info (#1292) * Smaller refactor to common parameters * Make maxThreadsPerFile privately set * FDR Filtering Prior to Protein Parsimony (#1296) * Fix all merge errors * Merge and Merge Fixes * edits * fixed issue * remove test code * brackets * Codacy Edits * rob edits * rob edit 2 * MBR with multiple proteases, has errors becasue mzLib method not yet incorporated * Make Parsimony only take into account 1% or better FDR peptides * removed regions * Fdr filtereing done with peptide with set mods accessed from psms after mathcing, before parsimony * FdrFiltering With Psms * FDR Filtering PSMs prior to parsimony * remove test code * removing extra spaces between lines * Camel Case Changes * relocate FDR filtering code to only occur if user performs parsimony * 1% and below PSMs assigned to parsimony proteins * Index out of bounds indexing engine fix (#1299) * Include troubleshooting for MSFileReader Address issue #1300 * fix "cumulative target" skipping numbers (#1302) * fix decoy skipping (#1303) * fix "cumulative target" skipping numbers * fix decoy skipping * File specific overwrote all other parameters to default (#1305) * File specific parameter overwrite fix * Remove clone * Remove useless note * remove useless resources * Revert "Remove clone" This reverts commit a706a4f. * Small fix ensures that crashes in entering indistinguishable proteins are handled (#1307) * Fix all merge errors * Merge and Merge Fixes * edits * fixed issue * remove test code * brackets * Codacy Edits * rob edits * rob edit 2 * MBR with multiple proteases, has errors becasue mzLib method not yet incorporated * Make Parsimony only take into account 1% or better FDR peptides * removed regions * Fdr filtereing done with peptide with set mods accessed from psms after mathcing, before parsimony * FdrFiltering With Psms * FDR Filtering PSMs prior to parsimony * remove test code * removing extra spaces between lines * Camel Case Changes * relocate FDR filtering code to only occur if user performs parsimony * 1% and below PSMs assigned to parsimony proteins * Fix with indistiguishable proteins. Ensuring that proteins not already present in the protein parsimony list * Update ProteinParsimonyEngine.cs * MetaMorpheus Add for maxThreads in MzLib change (#1310) * MetaMorpheus Add for maxThreads in MzLib change * Added maxThreads for different methods * MaxThread method add * Rob's MetaDraw... (#1306) * OutputNoice * haha * aha * uhum * hmph * Noice * Fixes * version check * 205 with auto_update * added features * Auto_Update * installer updated * Aha * Yah * Uhum * uhum * Wooh * revert * minor * uhum * Remove unused * noice * noice * codemaid * Yah * Cleaner * noice * hm * installer * installer * checkbox * Added Unimod Menu Bar * added features: installer, do_not_remind and Update Unimods * remove weird * weird * hm * hm * Cleaned up * add settings * add modslocation * Git final * restore * plz solve conflict * fied indent * Violent installer * indenting fixed * A Decent Installer * Fix menu option * Simplify updater * Update Product.wxs * Debug travis * Gah * Environment.GetFolderPath(Environment.SpecialFolder.ProgramFiles) * yah * Noice * Simplify * datadir menu option * Updated to Origin * MetaUpdater Added release notes * Meta Updater * Cleanup * clean_up and Update * desktop sc * package code fix * commented with Codacy checked errors and warnings on Codacy. All minor things. * Update TestScan.cs * fix * Update TestScan.cs * Update TestScan.cs * Large file test command backup * Update command * okay * Fix a few * Mkay * Update to Curr -- Appveyor * Set to release * Added Encrypted Cert * Update appveyor.yml * Update appveyor.yml * Update appveyor.yml * Update appveyor.yml * Update appveyor.yml * Update appveyor.yml * Update appveyor.yml * Update appveyor.yml * Update appveyor.yml * Update appveyor.yml * Update appveyor.yml * Update * update * Update CalibrationTask.cs * Update CalibrationTask.cs * yah * Bootstraper * cleanup * sln fix * bootin * Update MetaMorpheus.sln * Update MetaMorpheus.sln * bundle compile * Update MetaMorpheus.sln * Uhum * Hmhp * aha * fixup * yeah * yeah * update to upstream * XL Different crosslink sites * XL crosslink different amino acid GUI * XL Improve codeCov * XL Improve CodeCov2 * XL test Target 90% coverage * XLTest Target 90% coverage2 * XLTest Target 90% coverage3 * XL pep.XML mod position N ter refer as 0 * XL test diff crosslink site * Optimize xltest code * XL improve code quality * XL GenerateIntensityRanks() bug * Output pep.XML for Search Task * pepXML works for Search Task * pep.xml works for TPP now! * pep.xml Search Engine Tandom * Update pep.XML * PepXML update * PepXMLWriter Class * Remove useless library pepxml * Add Quantification Setting Window * QuanSetGUI * Start RealTime GUI project * Data Collect * Connection bug * Notification Event * Updata DataReceiver Notification * Dispatcher BeginInvoke * Add MetaDraw into MetaMorpheus * MetaDraw using MsDataFile * Data Receiver by TbNotification * Add Realtime database * dd * clear * cleanup dd * RealTime add parameter * Success generate ion index for real time * Check Thread * Add log4net * log in DataReceiver * DataReceiver cannot have logWatcher * Try BeginInvoke * LogWatcher BeginInvoke * Add Notification * Add Dump * check Notification 2nd * try DataReceiver.Notifications * metadraw * no sense * sync * Update Installer * MetaDraw update Product ions parameter * Update SpectrumForDataGrid * Update * MetaDraw Added * Fix Pull * MetaDraw Added * updates * MetaDraw * try to build * try to build 2 * metadraw edits * use established peptide classes to get fragments; graphical improvements; other code improvements * revamp interface * oops * Deisotoping options for GPTMD (#1319) * Remove method that was moved to mzLib (#1324) * Fix weird uni prot naming conflicts (#1321) * fix UniProt naming conflicts from the PTM list * rename some stuff * appveyor * temporary console output to figure out what appveyor is doing * appveyor... * appveyor.... * appveyor..... * warning message for duplicate IDs * Warning for more than 1 variable mod (#1318) * Warning for more than 1 variable mod * Added warning from issue #1027 * Centralized * Update GlobalGuiSettings.cs * Update SearchTaskWindow.xaml.cs * Compile fix (#1325) * compile fix * fix to compile * simpler * Output file name rename/organization (#1311) * File Output Reorganization * Test changed * Fixed Tests * BinGeneration Test fix * Cleaner Code * Fixes changed * lots of changes * small fix * Q value filter (#1327) * QValueParam * Changes to file writing * Small Changes * Smaller Changes * Merge conflicts * small things * Adapt test * Fixes * Qvalue variable change * Fixes * rob edits * rob edit 2 * rob edits 3 * succiylation rename (#1331) * Fix q value filter gui (#1332) * fix q value filter gui stuff in search task * one more thing * toml parsing * Rob's MetaDraw Added Features (#1333) * MetaDraw update * Create linkedlistToBST.java * changes * Updated MetaDraw * base sequence annotation * Fix Circle * Fix Width * mod annotation stuff * change ion sides in base seq annotation * Fix NSESTAP (#1329) * Remove commonparams from postsearchanalysisparameters * Update postProcessing construction * Update NSESTAP PWSM constructor (CAUTION) * Update PSAT * Fix removal of constructor * fix XL search crash when there are no results (#1337) * temporarily disable metadraw (#1342)
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After having installed the 64 bit version of MSFileReader 3.0 SP2 [within the _x86_x64 folder] and attempting to run some .raw orbitrap data files, I came up with this error on the search task when it tries to run my first raw file. Error can also be reproduced when I search using the spectra and database files from the MetaMorpheus tutorial page.
Run failed, Exception: Unable to cast COM object of type 'System.__ComObject' to interface type 'MSFileReaderLib.MSFileReader_XRawfile'. This operation failed because the QueryInterface call on the COM component for the interface with IID '{11B488A0-69B1-41FC-A660-FE8DF2A31F5B}' failed due to the following error: Error loading type library/DLL. (Exception from HRESULT: 0x80029C4A (TYPE_E_CANTLOADLIBRARY)).The crash, however, does not persist when both MSFileReader installations are run.
Just thought this may be of interest. Perhaps updating the wiki to specify that both installation files in both folders need to be installed for correct .raw reading?
Thanks! Looking forward to using MM
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