Add Installer, Stability Improvements for GUI, Use Speedier Tools #187
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- Updated the README - Simplified the Ensembl release management - Allows selection of either/both variant and isoform workflows now - Isoform workflow was updated to ProteomeGenerator workflow, which performs better on initial testing - GUI and snakemake code check for Spritz versioning - GUI automatically suggests updates - New GUI installer - GUI installer is downloaded and installed upon autoupdate - Allows specifying alternative Docker image for easier debugging - Checks docker info and prompts user to improve memory allocation if needed - Allow user to view output and running processes within GUI while running - Updated from NET framework to NET Core 3.1 - Outputs prose with citations - Organizes files into subfolders and copies final files to a directory - Output useful mappings for protein databases, e.g. accessions and variant descriptions - Output protein database compatible with MSFragger - Use the dbSNP VCF again instead of Ensembl if human is selected - Use fastp instead of skewer for speed - Use the number of threads specified by the user
This was referenced Aug 25, 2020
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acesnik
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Mar 23, 2021
Add Installer, Stability Improvements for GUI, Use Speedier Tools
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on initial testing
docker infoand prompts user to improve memory allocation if needed