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[WIP] Deconvolution using UniDec #625

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[WIP] Deconvolution using UniDec #625

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Commits on Mar 7, 2022

  1. i committing a tutorial for C api integration

    @avcarr2
    avcarr2 committed Mar 7, 2022
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  2. committing api tutorial

    @avcarr2
    avcarr2 committed Mar 7, 2022
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Commits on Mar 9, 2022

  1. Added unidec minimal library

    @avcarr2
    avcarr2 committed Mar 9, 2022
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  2. got rid of tutorial parts

    @avcarr2
    avcarr2 committed Mar 9, 2022
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  3. minial library

    @avcarr2
    avcarr2 committed Mar 9, 2022
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Commits on Mar 10, 2022

  1. UniDecMinimal now builds

    @avcarr2
    avcarr2 committed Mar 10, 2022
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  2. more files, tests, and it's almost working

    @avcarr2
    avcarr2 committed Mar 10, 2022
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Commits on Mar 11, 2022

  1. Unidec dll ported, still working compatibility

    @avcarr2
    avcarr2 committed Mar 11, 2022
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Commits on Mar 12, 2022

  1. updated support methods

    @avcarr2
    avcarr2 committed Mar 12, 2022
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Commits on Mar 14, 2022

  1. Main decon is not working.

    @avcarr2
    avcarr2 committed Mar 14, 2022
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  2. "Fixed issue where config was incorrect"

    @avcarr2
    avcarr2 committed Mar 14, 2022
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Commits on Mar 15, 2022

  1. fixed crash caused by memory

    @avcarr2
    avcarr2 committed Mar 15, 2022
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Commits on Mar 16, 2022

  1. added more tests

    @avcarr2
    avcarr2 committed Mar 16, 2022
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Commits on Mar 17, 2022

  1. more tests

    @avcarr2
    avcarr2 committed Mar 17, 2022
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Commits on Mar 18, 2022

  1. more tests. Breaking at KillB function

    @avcarr2
    avcarr2 committed Mar 18, 2022
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Commits on Mar 22, 2022

  1. new attempt at Unidec port

    @avcarr2
    avcarr2 committed Mar 22, 2022
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  2. commit prior to InputUnsafe modifications

    @avcarr2
    avcarr2 committed Mar 22, 2022
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Commits on Mar 23, 2022

  1. "pre-char byte incompatibility fix" 

    wq
    @avcarr2
    avcarr2 committed Mar 23, 2022
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  2. "changed barr from char* to byte* and updated func"

    @avcarr2
    avcarr2 committed Mar 23, 2022
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  3. ErrFunctionSpeedy is not working

    @avcarr2
    avcarr2 committed Mar 23, 2022
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Commits on Mar 24, 2022

  1. pre-modifications to make_isotopes

    @avcarr2
    avcarr2 committed Mar 24, 2022
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Commits on Mar 25, 2022

  1. Pre-setupIsotopes modifications

    @avcarr2
    avcarr2 committed Mar 25, 2022
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  2. pre-modifications of inputs

    @avcarr2
    avcarr2 committed Mar 25, 2022
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Commits on Mar 30, 2022

  1. pre-changing errfunspeedy commit

    @avcarr2
    avcarr2 committed Mar 30, 2022
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  2. fully functional UniDec algorithm

    @avcarr2
    avcarr2 committed Mar 30, 2022
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Commits on Apr 1, 2022

  1. "pre-changing decon commit" 

     :wq
    @avcarr2
    avcarr2 committed Apr 1, 2022
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  2. added unsafe decon struct. In process of refactoring

    @avcarr2
    avcarr2 committed Apr 1, 2022
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Commits on Apr 5, 2022

  1. fix median polish bug when proteins cannot be quantified (smith-chem-… 

    …wisc#624)

* fix median polish bug when proteins cannot be quantified

* comment out protein quant intensity checks in some tests. add explainer comment
    @rmillikin
    rmillikin committed Apr 5, 2022
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  2. fixed scoring function

    @avcarr2
    avcarr2 committed Apr 5, 2022
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  3. pre-decon workflow method implementation

    @avcarr2
    avcarr2 committed Apr 5, 2022
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Commits on Apr 8, 2022

  1. Added unidec deconvolution method

    @avcarr2
    avcarr2 committed Apr 8, 2022
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Commits on Apr 13, 2022

  1. added homebrew UniDec algorithm

    @avcarr2
    avcarr2 committed Apr 13, 2022
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  2. fully functioning homebrewed unidec algo

    @avcarr2
    avcarr2 committed Apr 13, 2022
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Commits on Apr 14, 2022

  1. em commit

    @avcarr2
    avcarr2 committed Apr 14, 2022
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Commits on Apr 19, 2022

  1. UniDec algo homebrew kinda working

    @avcarr2
    avcarr2 committed Apr 19, 2022
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  2. update file structure

    @avcarr2
    avcarr2 committed Apr 19, 2022
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  3. i committing a tutorial for C api integration

    @avcarr2
    avcarr2 committed Apr 19, 2022
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  4. committing api tutorial

    @avcarr2
    avcarr2 committed Apr 19, 2022
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  5. Added unidec minimal library

    @avcarr2
    avcarr2 committed Apr 19, 2022
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  6. got rid of tutorial parts

    @avcarr2
    avcarr2 committed Apr 19, 2022
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  7. minial library

    @avcarr2
    avcarr2 committed Apr 19, 2022
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  8. UniDecMinimal now builds

    @avcarr2
    avcarr2 committed Apr 19, 2022
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  9. Unidec dll ported, still working compatibility

    @avcarr2
    avcarr2 committed Apr 19, 2022
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  10. updated support methods

    @avcarr2
    avcarr2 committed Apr 19, 2022
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  11. updated structure

    @avcarr2
    avcarr2 committed Apr 19, 2022
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  12. redid the whole structure

    @avcarr2
    avcarr2 committed Apr 19, 2022
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