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clinical_metagenomics

This repository includes

  1. the main pipeline script for processing of fastqs files prior to taxonomic classification with metaMix
  2. example for submission script
  3. R package for metaMix v0.4 (not yet on CRAN)
  4. example submission script for metaMix nucleotide
  5. example submission script for metaMix protein (added Sept 2021)