clinical_metagenomics

This repository includes

the main pipeline script for processing of fastqs files prior to taxonomic classification with metaMix
example for submission script
R package for metaMix v0.4 (not yet on CRAN)
example submission script for metaMix nucleotide
example submission script for metaMix protein (added Sept 2021)

Name		Name	Last commit message	Last commit date
Latest commit History 3 Commits
README.md		README.md
metaMix_0.4.tar.gz		metaMix_0.4.tar.gz
pipeline_RNAseq_November2019_pchuckle.sh		pipeline_RNAseq_November2019_pchuckle.sh
submitMultipleMetamix_nucl_norRNA.sh		submitMultipleMetamix_nucl_norRNA.sh
submitMultipleMetamix_prot_norRNA.sh		submitMultipleMetamix_prot_norRNA.sh
submit_pipeline_November2019.sh		submit_pipeline_November2019.sh

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