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smped · Feb 19, 2024 · a25d9f2 · a25d9f2
1 parent d400bcb
commit a25d9f2
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Showing 7 changed files with 7 additions and 16 deletions.
diff --git a/DESCRIPTION b/DESCRIPTION
@@ -1,7 +1,7 @@
 Package: transmogR
 Type: Package
 Title: Modify a set of reference sequences using a set of variants
-Version: 0.99.2
+Version: 0.99.3
 Authors@R: person("Stevie", "Pederson", 
     email = "stephen.pederson.au@gmail.com", 
     role = c("aut", "cre"),

diff --git a/R/genomogrify.R b/R/genomogrify.R
@@ -48,9 +48,7 @@
 #' @export
 #' @name genomogrify
 #' @rdname genomogrify-methods
-setGeneric(
-    "genomogrify", function(x, var, ...){standardGeneric("genomogrify")}
-)
+setGeneric("genomogrify", function(x, var, ...) standardGeneric("genomogrify"))
 #' @importFrom S4Vectors mcols
 #' @importFrom GenomeInfoDb seqlevels seqnames
 #' @importFrom IRanges width

diff --git a/R/indelcator.R b/R/indelcator.R
@@ -52,9 +52,7 @@
 #' @export
 #' @name indelcator
 #' @rdname indelcator-methods
-setGeneric(
-    "indelcator", function(x, indels, ...){standardGeneric("indelcator")}
-)
+setGeneric("indelcator", function(x, indels, ...) standardGeneric("indelcator"))
 #'
 #'
 #' @import Biostrings

diff --git a/R/overlapsByVar.R b/R/overlapsByVar.R
@@ -30,7 +30,7 @@
 #' @name overlapsByVar
 #' @rdname overlapsByVar-methods
 setGeneric(
-    "overlapsByVar", function(x, var, ...){standardGeneric("overlapsByVar")}
+    "overlapsByVar", function(x, var, ...) standardGeneric("overlapsByVar")
 )
 #'
 #' @importFrom IRanges overlapsAny

diff --git a/R/owl.R b/R/owl.R
@@ -38,9 +38,7 @@
 #' @export
 #' @name owl
 #' @rdname owl-methods
-setGeneric(
-    "owl", function(seq, snps, ...){standardGeneric("owl")}
-)
+setGeneric("owl", function(seq, snps, ...) standardGeneric("owl"))
 #' @import Biostrings
 #' @importFrom S4Vectors mcols
 #' @importFrom methods is

diff --git a/R/parY.R b/R/parY.R
@@ -40,9 +40,7 @@
 #' @export
 #' @name parY
 #' @rdname parY-methods
-setGeneric(
-    "parY", function(x, ...){standardGeneric("parY")}
-)
+setGeneric("parY", function(x, ...) standardGeneric("parY"))
 #' @import GenomicRanges
 #' @importFrom GenomeInfoDb seqnames
 #' @rdname parY-methods

diff --git a/R/transmogrify.R b/R/transmogrify.R
@@ -70,8 +70,7 @@
 #' @name transmogrify
 #' @rdname transmogrify-methods
 setGeneric(
-    "transmogrify",
-    function(x, var, exons, ...){standardGeneric("transmogrify")}
+    "transmogrify", function(x, var, exons, ...) standardGeneric("transmogrify")
 )
 #' @importFrom S4Vectors mcols splitAsList
 #' @importFrom GenomeInfoDb seqlevels seqnames