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Dockerfile
56 lines (38 loc) · 2.7 KB
/
Dockerfile
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FROM rocker/geospatial:3.5.1
LABEL maintainer="Saras Windecker"
LABEL email="saras.windecker@gmail.com"
# Install major libraries
RUN apt-get update \
&& apt-get install -y --no-install-recommends \
zip \
unzip
# ---------------------------------------------
ENV NB_USER rstudio
ENV NB_UID 1000
# And set ENV for R! It doesn't read from the environment...
RUN echo "PATH=${PATH}" >> /usr/local/lib/R/etc/Renviron
RUN echo "export PATH=${PATH}" >> ${HOME}/.profile
# The `rsession` binary that is called by nbrsessionproxy to start R doesn't seem to start
# without this being explicitly set
ENV LD_LIBRARY_PATH /usr/local/lib/R/lib
ENV HOME /home/${NB_USER}
WORKDIR ${HOME}
# ---------------------------------------------
# Install extra latex style files
## Saves downloading whenever tinytex runs
## Inspired by Yihui - https://github.com/yihui/tinytex/issues/135#issuecomment-514351695
## NB: tinytex extras installed at /opt/TinyTeX/tlpkg/TeXLive/
RUN R --quiet -e 'tinytex::tlmgr_install(c("a4wide", "algorithms", "appendix", "babel-english", "bbm-macros", "beamer", "breakurl", "catoptions", "charter", "cite", "cleveref", "colortbl", "comment", "courier", "eepic", "enumitem", "eso-pic", "eurosym", "extsizes", "fancyhdr", "floatrow", "fontaxes", "fpl", "hardwrap", "koma-script", "lastpage", "lettrine", "libertine", "lineno", "lipsum", "ltxkeys", "ly1", "mathalpha", "mathpazo", "mathtools", "mdframed", "mdwtools", "microtype", "morefloats", "ms", "multirow", "mweights", "ncctools", "ncntrsbk", "needspace", "newtx", "ntgclass", "numname", "palatino", "pbox", "pdfpages", "pgf", "picinpar", "preprint", "preview", "psnfss", "refstyle", "roboto", "sectsty", "setspace", "siunitx", "srcltx", "standalone", "stmaryrd", "sttools", "subfig", "subfigure", "symbol", "tabu", "textcase", "threeparttable", "thumbpdf", "titlesec", "tufte-latex", "ucs", "ulem", "units", "varwidth", "vmargin", "wallpaper", "wrapfig", "xargs", "xcolor", "xstring", "xwatermark"))';
# ---------------------------------------------
# Add custom installations here
## Install packages based on DESCRIPTION file in repository.
## Inspired from Holepunch package, by Karthik Ram: https://github.com/karthik/holepunch
## Copies your description file into the Docker Container, specifying dependencies
USER root
COPY ./DESCRIPTION ${HOME}
# The above line adds only the description file for the project
# Uncomment the following line if you want the container to contain your entire repo
#COPY . ${HOME}
RUN chown -R ${NB_USER} ${HOME}
RUN if [ -f DESCRIPTION ]; then R --quiet -e "options(repos = list(CRAN = 'http://mran.revolutionanalytics.com/snapshot/2019-08-26/')); devtools::install_deps()"; fi
# Add further custom installations as needed