Version 0.4.1

Fixed the bug in linking related to multiple definitions. Removed Makevars.win as it is identical to Makevars. Removed files related to fortran and non-essential text files in Sundials source code.

DESCRIPTION

@@ -1,7 +1,7 @@
 Package: sundialr
 Type: Package
 Title: An Interface to 'SUNDIALS' Ordinary Differential Equation (ODE) Solvers 
-Version: 0.1.4
+Version: 0.1.4.1
 Authors@R: c(
     person("Satyaprakash", "Nayak", "", "sn248@cornell.edu", c("aut", "cre","cph"), comment = c(ORCID = "0000-0001-7225-1317")),
     person("Lawrence Livermore National Security", role =  c("cph")),
@@ -10,15 +10,14 @@ Authors@R: c(
 Maintainer: Satyaprakash Nayak <sn248@cornell.edu>
 URL: https://github.com/sn248/sundialr
 BugReports: https://github.com/sn248/sundialr/issues
-Description: Provides a way to call the functions in 'SUNDIALS' C ODE solving library (<https://computation.llnl.gov/projects/sundials>). Currently the serial version of ODE solver, 'CVODE', sensitivity calculator 'CVODES' and differential algebraic solver 'IDA' from the 'SUNDIALS' library are implemented. The package requires ODE to be written as an 'R' or 'Rcpp' function and does not require the 'SUNDIALS' library to be installed on the local machine.
+Description: Provides a way to call the functions in 'SUNDIALS' C ODE solving library (<https://computing.llnl.gov/projects/sundials>). Currently the serial version of ODE solver, 'CVODE', sensitivity calculator 'CVODES' and differential algebraic solver 'IDA' from the 'SUNDIALS' library are implemented. The package requires ODE to be written as an 'R' or 'Rcpp' function and does not require the 'SUNDIALS' library to be installed on the local machine.
 License: BSD_3_clause + file LICENSE
 Copyright: file COPYRIGHTS
-LazyData: TRUE
 Imports:
     Rcpp (>= 0.12.5)
 LinkingTo:
     Rcpp, RcppArmadillo
-RoxygenNote: 7.1.0
+RoxygenNote: 7.1.1
 Suggests: 
     knitr,
     rmarkdown,

NEWS

@@ -1,3 +1,8 @@
+sundialr v0.1.4.1
+================
+Bug fixex:
+* Fixed the linking problem due to multiple defined sybmols
+
 sundialr v0.1.4
 ================
 

R/zzz.R

@@ -1,4 +1,4 @@
 .onAttach <- function(...){
   packageStartupMessage(
-    "SUNDIALS - Copyright (c) 2002-2020, Lawrence Livermore National Security and Southern Methodist University.\nAll rights reserved.\nSee - https://computation.llnl.gov/projects/sundials\nsundialr - https://github.com/sn248/sundialr")
+    "SUNDIALS - Copyright (c) 2002-2020, Lawrence Livermore National Security and Southern Methodist University.\nAll rights reserved.")
   }

README.md

@@ -21,6 +21,8 @@ to simulate the effect of multiple bolus doses of a drug in clinical pharmacokin
 vignette for more details.
 
 ## What's new?
+### Release 0.1.4.1
++ Fixed the linking bug due to multiple defined symbols. No other change.
 
 ### Release 0.1.4
 + This version has version 5.2.0 of `SUNDIALS` (released in March 2020) at the back end.

cran-comments.md

@@ -1,3 +1,7 @@
+## Comments for version 0.1.4.1
+* Fixed the problem with linking due to multiple definitions. The downstream 
+dependency should be unaffected by this change.
+
 ## Comments for version 0.1.4
 
 ## Test environments

src/Makevars

@@ -1,5 +1,6 @@
 CXX=clang++
-PKG_CPPFLAGS= -I../inst/include/ -I./inst/ -DHAVE_CONFIG_H
+PKG_CPPFLAGS= -I../inst/include/ -I./inst/ -DHAVE_CONFIG_H -DARMA_USE_CXX11
+CXX_STD = CXX11
 PKG_LIBS= $(LAPACK_LIBS) $(BLAS_LIBS) $(FLIBS) -L../inst/ -lsundials_all
 LIBS=-L./ -L../inst/
 
@@ -30,12 +31,10 @@ SOURCES_IDA = ./sundials/ida/ida.c \
 ./sundials/ida/ida_io.c ./sundials/ida/ida_ls.c \
 ./sundials/ida/ida_nls.c ./sundials/ida/ida_spils.c
 
-SOURCES_NVECSERIAL= ./sundials/nvector/serial/fnvector_serial.c \
-./sundials/nvector/serial/nvector_serial.c
+SOURCES_NVECSERIAL= ./sundials/nvector/serial/nvector_serial.c
 
 SOURCES_SUNDIALS= ./sundials/sundials/sundials_band.c ./sundials/sundials/sundials_dense.c \
-./sundials/sundials/sundials_direct.c ./sundials/sundials/sundials_futils.c \
-./sundials/sundials/sundials_iterative.c \
+./sundials/sundials/sundials_direct.c ./sundials/sundials/sundials_iterative.c \
 ./sundials/sundials/sundials_linearsolver.c \
 ./sundials/sundials/sundials_math.c ./sundials/sundials/sundials_matrix.c \
 ./sundials/sundials/sundials_nonlinearsolver.c \
@@ -47,23 +46,17 @@ SOURCES_SUNDIALS= ./sundials/sundials/sundials_band.c ./sundials/sundials/sundia
 ./sundials/sundials/sundials_sparse.c ./sundials/sundials/sundials_spbcgs.c \
 ./sundials/sundials/sundials_sptfqmr.c
 
-SOURCES_SUNLINSOL_BAND = ./sundials/sunlinsol/band/fsunlinsol_band.c \
-./sundials/sunlinsol/band/sunlinsol_band.c
+SOURCES_SUNLINSOL_BAND = ./sundials/sunlinsol/band/sunlinsol_band.c
 
-SOURCES_SUNLINSOL_DENSE = ./sundials/sunlinsol/dense/fsunlinsol_dense.c \
-./sundials/sunlinsol/dense/sunlinsol_dense.c
+SOURCES_SUNLINSOL_DENSE = ./sundials/sunlinsol/dense/sunlinsol_dense.c
 
-SOURCES_SUNMAT_BAND = ./sundials/sunmatrix/band/fsunmatrix_band.c \
-./sundials/sunmatrix/band/sunmatrix_band.c
+SOURCES_SUNMAT_BAND = ./sundials/sunmatrix/band/sunmatrix_band.c
 
-SOURCES_SUNMAT_DENSE = ./sundials/sunmatrix/dense/fsunmatrix_dense.c \
-./sundials/sunmatrix/dense/sunmatrix_dense.c
+SOURCES_SUNMAT_DENSE = ./sundials/sunmatrix/dense/sunmatrix_dense.c
 
-SOURCES_SUNNONLINSOL_FIXEDPOINT = ./sundials/sunnonlinsol/fixedpoint/fsunnonlinsol_fixedpoint.c \
-./sundials/sunnonlinsol/fixedpoint/sunnonlinsol_fixedpoint.c
+SOURCES_SUNNONLINSOL_FIXEDPOINT = ./sundials/sunnonlinsol/fixedpoint/sunnonlinsol_fixedpoint.c
 
-SOURCES_SUNNONLINSOL_NEWTON = ./sundials/sunnonlinsol/newton/fsunnonlinsol_newton.c \
-./sundials/sunnonlinsol/newton/sunnonlinsol_newton.c
+SOURCES_SUNNONLINSOL_NEWTON = ./sundials/sunnonlinsol/newton/sunnonlinsol_newton.c
 
 SOURCES_SUNDIALS_ALL= $(SOURCES_CVODES) $(SOURCES_IDA) $(SOURCES_NVECSERIAL) $(SOURCES_SUNDIALS) \
 $(SOURCES_SUNLINSOL_DENSE) $(SOURCES_SUNLINSOL_BAND) \