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🤖 I have created a release \*beep\* \*boop\* --- ## [1.32.0](https://www.github.com/snakemake/snakemake-wrappers/compare/v1.31.1...v1.32.0) (2023-06-07) ### Features * add ragtag wrapper ([#1397](https://www.github.com/snakemake/snakemake-wrappers/issues/1397)) ([6a967c5](https://www.github.com/snakemake/snakemake-wrappers/commit/6a967c540801b30240c63ca12332bac8dbf0fe2c)) * add wrapper to plot nonpareil results ([#1398](https://www.github.com/snakemake/snakemake-wrappers/issues/1398)) ([1b31bd5](https://www.github.com/snakemake/snakemake-wrappers/commit/1b31bd5fcf5b24d5b7603579c0d024aee64551ab)) ### Bug Fixes * bug with SE reads ([#1395](https://www.github.com/snakemake/snakemake-wrappers/issues/1395)) ([f44c6a0](https://www.github.com/snakemake/snakemake-wrappers/commit/f44c6a0875794f13eb03983a876d00a5226ce02b)) * fastqc doesn't know how to process multiple files. ([#1327](https://www.github.com/snakemake/snakemake-wrappers/issues/1327)) ([b5b9878](https://www.github.com/snakemake/snakemake-wrappers/commit/b5b9878a91bbbdc4ccb604d5b5864a12c34ba02d)) * indexed bam files can now be put as input ([#1378](https://www.github.com/snakemake/snakemake-wrappers/issues/1378)) ([7c53b89](https://www.github.com/snakemake/snakemake-wrappers/commit/7c53b89cd6b70b4675f4ee82fd55982f4cfa51b1)) ### Performance Improvements * autobump bio/bcftools/filter ([#1383](https://www.github.com/snakemake/snakemake-wrappers/issues/1383)) ([dab7630](https://www.github.com/snakemake/snakemake-wrappers/commit/dab7630075ae834c61918dc4ee5cb302022bc8ed)) * autobump bio/bcftools/view ([#1394](https://www.github.com/snakemake/snakemake-wrappers/issues/1394)) ([8a8d877](https://www.github.com/snakemake/snakemake-wrappers/commit/8a8d877c51dce3c2a966f1ff884728d0333a49fd)) * autobump bio/bedtools/complement ([#1392](https://www.github.com/snakemake/snakemake-wrappers/issues/1392)) ([7284ac2](https://www.github.com/snakemake/snakemake-wrappers/commit/7284ac2b1c38678db067c5c04fce590fdd9a85c9)) * autobump bio/bedtools/intersect ([#1403](https://www.github.com/snakemake/snakemake-wrappers/issues/1403)) ([6a839c1](https://www.github.com/snakemake/snakemake-wrappers/commit/6a839c182d0d0c1f9dc54b5b560491ccf01b21ce)) * autobump bio/bustools/sort ([#1411](https://www.github.com/snakemake/snakemake-wrappers/issues/1411)) ([54e2956](https://www.github.com/snakemake/snakemake-wrappers/commit/54e295607ac93101983916429de3bb3a9a1279fe)) * autobump bio/bwa-mem2/mem ([#1389](https://www.github.com/snakemake/snakemake-wrappers/issues/1389)) ([9a5828c](https://www.github.com/snakemake/snakemake-wrappers/commit/9a5828cae18fe542e41b42796e9da03d50fbd8a6)) * autobump bio/bwa/samse ([#1405](https://www.github.com/snakemake/snakemake-wrappers/issues/1405)) ([476f722](https://www.github.com/snakemake/snakemake-wrappers/commit/476f722e80a56405f93aa74480be74c558f83940)) * autobump bio/cutadapt/pe ([#1401](https://www.github.com/snakemake/snakemake-wrappers/issues/1401)) ([38dfed4](https://www.github.com/snakemake/snakemake-wrappers/commit/38dfed4b9f5bd1504dd40bad2432b3ebf8096ce0)) * autobump bio/deeptools/bamcoverage ([#1409](https://www.github.com/snakemake/snakemake-wrappers/issues/1409)) ([426852b](https://www.github.com/snakemake/snakemake-wrappers/commit/426852bfe9f60bd1c2d000f64af4c838d677f783)) * autobump bio/deeptools/computematrix ([#1373](https://www.github.com/snakemake/snakemake-wrappers/issues/1373)) ([6f3e9b5](https://www.github.com/snakemake/snakemake-wrappers/commit/6f3e9b5eedd5019ea36e840e7cc7101dbdc77639)) * autobump bio/deseq2/deseqdataset ([#1369](https://www.github.com/snakemake/snakemake-wrappers/issues/1369)) ([8ca67e8](https://www.github.com/snakemake/snakemake-wrappers/commit/8ca67e82ebb92e18dce5baf153f72b3e77bad7c6)) * autobump bio/fastq_screen ([#1375](https://www.github.com/snakemake/snakemake-wrappers/issues/1375)) ([abb82c4](https://www.github.com/snakemake/snakemake-wrappers/commit/abb82c4a98be3c71e17de50670d19579f63901ec)) * autobump bio/gatk/learnreadorientationmodel ([#1407](https://www.github.com/snakemake/snakemake-wrappers/issues/1407)) ([614f343](https://www.github.com/snakemake/snakemake-wrappers/commit/614f34377df8d7557959d15a50ff6238896bff64)) * autobump bio/gatk/scatterintervalsbyns ([#1387](https://www.github.com/snakemake/snakemake-wrappers/issues/1387)) ([61944c3](https://www.github.com/snakemake/snakemake-wrappers/commit/61944c37e94c2ef80228f3310ef7e64fe3ab0f5e)) * autobump bio/gatk/selectvariants ([#1376](https://www.github.com/snakemake/snakemake-wrappers/issues/1376)) ([e2962a1](https://www.github.com/snakemake/snakemake-wrappers/commit/e2962a14ccff2e339f5d137c729b1d5607b9e666)) * autobump bio/gatk/variantrecalibrator ([#1374](https://www.github.com/snakemake/snakemake-wrappers/issues/1374)) ([341ccaa](https://www.github.com/snakemake/snakemake-wrappers/commit/341ccaac9e9343774c57477e8d6fede514b7c8eb)) * autobump bio/gatk3/indelrealigner ([#1371](https://www.github.com/snakemake/snakemake-wrappers/issues/1371)) ([6ef06a1](https://www.github.com/snakemake/snakemake-wrappers/commit/6ef06a1e8fa5cad5a69906061d3827c656e6843b)) * autobump bio/hisat2/index ([#1370](https://www.github.com/snakemake/snakemake-wrappers/issues/1370)) ([b5e37ab](https://www.github.com/snakemake/snakemake-wrappers/commit/b5e37ab3ed8bd70ed969a444274a183fa9ff36f8)) * autobump bio/last/lastdb ([#1400](https://www.github.com/snakemake/snakemake-wrappers/issues/1400)) ([db60b46](https://www.github.com/snakemake/snakemake-wrappers/commit/db60b46ce39e9721770901a0b46084bc68823340)) * autobump bio/open-cravat/module ([#1399](https://www.github.com/snakemake/snakemake-wrappers/issues/1399)) ([fc2b86a](https://www.github.com/snakemake/snakemake-wrappers/commit/fc2b86a92430d32b2d8f5f8aa1ee1a697959c1de)) * autobump bio/paladin/index ([#1379](https://www.github.com/snakemake/snakemake-wrappers/issues/1379)) ([598d8e7](https://www.github.com/snakemake/snakemake-wrappers/commit/598d8e717261c02d663d99a0c81d44c8b9cfaac8)) * autobump bio/picard/bedtointervallist ([#1408](https://www.github.com/snakemake/snakemake-wrappers/issues/1408)) ([b0f6786](https://www.github.com/snakemake/snakemake-wrappers/commit/b0f6786e60c03cd82eede73456853375a63877cf)) * autobump bio/picard/revertsam ([#1384](https://www.github.com/snakemake/snakemake-wrappers/issues/1384)) ([007cbd1](https://www.github.com/snakemake/snakemake-wrappers/commit/007cbd17a36ada11943908d6c02dc4b8fc74a226)) * autobump bio/pyroe/makeunspliceunspliced ([#1406](https://www.github.com/snakemake/snakemake-wrappers/issues/1406)) ([61d8377](https://www.github.com/snakemake/snakemake-wrappers/commit/61d83774a3c86e5624e61ea4594c325fddf8bdd3)) * autobump bio/samtools/sort ([#1410](https://www.github.com/snakemake/snakemake-wrappers/issues/1410)) ([935a677](https://www.github.com/snakemake/snakemake-wrappers/commit/935a6770d422287330ed1977a44b4be245437026)) * autobump bio/snpsift/annotate ([#1390](https://www.github.com/snakemake/snakemake-wrappers/issues/1390)) ([f59bb6b](https://www.github.com/snakemake/snakemake-wrappers/commit/f59bb6ba01e13333fc8693b9e55773814d37a0dc)) * autobump bio/spades/metaspades ([#1385](https://www.github.com/snakemake/snakemake-wrappers/issues/1385)) ([df5c0d1](https://www.github.com/snakemake/snakemake-wrappers/commit/df5c0d18ce6a38a3db6206083414ee69fceeeecf)) * autobump bio/sra-tools/fasterq-dump ([#1380](https://www.github.com/snakemake/snakemake-wrappers/issues/1380)) ([8b007a5](https://www.github.com/snakemake/snakemake-wrappers/commit/8b007a51a066cbba0f0a390a08fa8e5c60d8464c)) * autobump bio/strling/merge ([#1404](https://www.github.com/snakemake/snakemake-wrappers/issues/1404)) ([f62427b](https://www.github.com/snakemake/snakemake-wrappers/commit/f62427b3abec766d7d13ad6d7f93c9c27456d363)) * autobump bio/ucsc/faToTwoBit ([#1388](https://www.github.com/snakemake/snakemake-wrappers/issues/1388)) ([8356b4f](https://www.github.com/snakemake/snakemake-wrappers/commit/8356b4fe00cad3529484a821bc7582b6f5a88a51)) * autobump bio/ucsc/gtfToGenePred ([#1391](https://www.github.com/snakemake/snakemake-wrappers/issues/1391)) ([32aa42f](https://www.github.com/snakemake/snakemake-wrappers/commit/32aa42f187351108aa7f6d2ca060c2446c16f9e6)) * autobump bio/ucsc/twoBitToFa ([#1393](https://www.github.com/snakemake/snakemake-wrappers/issues/1393)) ([ae1453a](https://www.github.com/snakemake/snakemake-wrappers/commit/ae1453a323d11c7a4d5eee81031180f0db690e47)) * autobump bio/vep/annotate ([#1386](https://www.github.com/snakemake/snakemake-wrappers/issues/1386)) ([3365493](https://www.github.com/snakemake/snakemake-wrappers/commit/3365493f7e2a93c55b700b9446ee5e73ab7c90cd)) * autobump bio/vg/construct ([#1381](https://www.github.com/snakemake/snakemake-wrappers/issues/1381)) ([0785aac](https://www.github.com/snakemake/snakemake-wrappers/commit/0785aaca7e5ce77faadf3cfe49b23d6af551bf57)) * autobump bio/vg/ids ([#1354](https://www.github.com/snakemake/snakemake-wrappers/issues/1354)) ([3743f2e](https://www.github.com/snakemake/snakemake-wrappers/commit/3743f2ec07af726542ed605f40377ad73c25b957)) * autobump bio/vg/prune ([#1377](https://www.github.com/snakemake/snakemake-wrappers/issues/1377)) ([7dc7890](https://www.github.com/snakemake/snakemake-wrappers/commit/7dc7890769257d161731b2004401db4b6760bae6)) * autobump bio/vg/sim ([#1402](https://www.github.com/snakemake/snakemake-wrappers/issues/1402)) ([3bf4bf7](https://www.github.com/snakemake/snakemake-wrappers/commit/3bf4bf754598d7efbff776d4a90cf3114c4e2383)) --- This PR was generated with [Release Please](https://github.com/googleapis/release-please). See [documentation](https://github.com/googleapis/release-please#release-please). Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>
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