MMseqs2/.cirrus.yml at master · soedinglab/MMseqs2 · GitHub

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env:
  CIRRUS_CLONE_SUBMODULES: true

task:
  name: FreeBSD
  freebsd_instance:
    image_family: freebsd-14-2-snap
  install_script: |
    # pkg update -f
    pkg install -y cmake git samtools rust
    export PATH=/usr/local/bin:$PATH
  compile_script: |
    mkdir build && cd build
    cmake -DCMAKE_BUILD_TYPE=Release -DHAVE_TESTS=1 -DENABLE_WERROR=1 -DHAVE_SSE4_1=1 -DRust_COMPILER=/usr/local/bin/rustc ..
    make -j $(sysctl -n hw.ncpu)
  test_script: ./util/regression/run_regression.sh ./build/src/mmseqs SCRATCH

task:
  name: "Old compilers"
  container:
    image: debian:jessie-slim
    cpu: 4
    memory: 8G
  matrix:
    - name: Clang-4
      install_script: |
        echo "deb [trusted=yes] http://archive.debian.org/debian jessie main" > /etc/apt/sources.list
        echo "deb [trusted=yes] http://archive.debian.org/debian-security jessie/updates main" >> /etc/apt/sources.list
        apt-get update --yes --force-yes || true
        apt-get install -y --no-install-suggests --no-install-recommends wget clang-4.0 libc++-dev make git ca-certificates curl
        curl --proto '=https' --tlsv1.2 -sSf https://sh.rustup.rs | sh -s -- -y
        export PATH=/root/.cargo/bin:$PATH
      env:
        CC: clang-4.0
        CXX: clang++-4.0
    - name: GCC-4.9
      install_script: |
        echo "deb [trusted=yes] http://archive.debian.org/debian jessie main" > /etc/apt/sources.list
        echo "deb [trusted=yes] http://archive.debian.org/debian-security jessie/updates main" >> /etc/apt/sources.list
        apt-get update --yes --force-yes || true
        apt-get install -y --no-install-suggests --no-install-recommends wget gcc-4.9 g++-4.9 make git ca-certificates curl
        curl --proto '=https' --tlsv1.2 -sSf https://sh.rustup.rs | sh -s -- -y
        export PATH=/root/.cargo/bin:$PATH
      env:
        CC: gcc-4.9
        CXX: g++-4.9

  compile_script: |
    mkdir -p /opt/cmake-3.31.0
    wget https://cmake.org/files/v3.31/cmake-3.31.0-linux-x86_64.sh
    chmod +x cmake-3.31.0-linux-x86_64.sh
    ./cmake-3.31.0-linux-x86_64.sh --skip-license --prefix=/opt/cmake-3.31.0
    export PATH=/opt/cmake-3.31.0/bin/:$PATH
    export PATH=/root/.cargo/bin:$PATH
    mkdir build && cd build
    cmake -DCMAKE_BUILD_TYPE=Release -DHAVE_TESTS=1 -DENABLE_WERROR=0 -DHAVE_SSE4_1=1 -DREQUIRE_OPENMP=0 -DRust_COMPILER=/root/.cargo/bin/rustc ..
    make -j $(nproc --all)
  test_script: |
    export PATH=/opt/cmake-3.31.0/bin/:$PATH
    export PATH=/root/.cargo/bin:$PATH
    MMSEQS_NUM_THREADS=4 ./util/regression/run_regression.sh ./build/src/mmseqs SCRATCH SEARCH