Missing files after creating database

[paulinefx]

Hello,
I created a database with the chapter 3.5 of the userguide, but by the end I was missing files.
I only got :
_a3m.ffdata
_a3m.ffinddex
_hhm.ffdata
_hhm.ffindex
_cs219.ffdata
_cs219.ffindex

I saw that the _a3m_db, _hhm_db were copies of the .ffdata and the _a3m_db.index, _hhm_db.index were copies of the .ffindex with the extensions of the file names. So they are easy to create with a script. But for the files .cs219 and .cs219.sizes I do not know how to create them.

For the creation of my database I already had alignments in fasta files, so I reformated them in a3m files, added the prediction of secondary structure, created the hhm files. Then I made the ffdat and ffindex for the a3m and hhm file. Then I used cstranslate to produce the cs219.ffdata and index, then I followed every step of the chapter 3.5.

Thank you in advance for your help.

Pauline

[milot-mirdita]

You only need those files if you want to use the database with the old legacy HH-suite 2.0.XX versions. If you are using the current HH-suite 3, you are already good to go. If you really need support for the old version, I can upload the scripts for you.

[paulinefx]

Ok ! I have the 2 versions on my computer and used the 2.0.16 version instead of the 3.
Thank you !

[milot-mirdita]

No problem, happy to help :)