Be less stringent on the naming of bam files

sof202 · Apr 24, 2024 · 4f48fd9 · 4f48fd9
1 parent f07dde6
commit 4f48fd9
Showing 1 changed file with 2 additions and 2 deletions.
diff --git a/JobSubmission/3_SubsampleBamFiles.sh b/JobSubmission/3_SubsampleBamFiles.sh
@@ -163,7 +163,7 @@ cd "${PROCESSED_FULL_FILE_PATH}" || \
 doesn't exist, make sure that you typed the epigenetic mark correctly and that \
 FilePaths.txt is pointing to the correct directory."; finishing_statement 1; }
 
-find . -type f -name "*.sorted.filtered.noDuplicates.bam" \
+find . -type f -name "*.bam" \
 > List_Of_Bam_Files_To_Merge.txt
 
 module purge
@@ -195,4 +195,4 @@ rm "FullMerged.${mark_name}.bam"
 cd "${PROCESSED_FULL_FILE_PATH}" || finishing_statement 1
 rm List_Of_Bam_Files_To_Merge.txt
 
-finishing_statement 0
+finishing_statement 0