A bash script to extract PDB files using PDB codes Steps to execute: 1. Download batch_download.sh into directory 2. Extract pdb codes or PDB IDS (4 letter) into a text file. Each pdb code must be seperated by a comma 2.1 if you need to extract pdb codes from fasta file of protein sequences. get the python script at :** https://github.com/sofimukhtar/Python_snippets_for_bioinformatics.git** 3. open the terminal and run : ./batch_download.sh -f pdb_codes_file.txt -p
-
Notifications
You must be signed in to change notification settings - Fork 1
sofimukhtar/Extract_PDB
This commit does not belong to any branch on this repository, and may belong to a fork outside of the repository.
Folders and files
Name | Name | Last commit message | Last commit date | |
---|---|---|---|---|
Repository files navigation
About
A bash script to extract PDB files using PDB codes
Resources
Stars
Watchers
Forks
Releases
No releases published
Packages 0
No packages published