GTDB release 9 - RS220 - databases

[jorondo1]

Hi, I was wondering if the gtdb reps 220 had been sketched (or is about to be)? Otherwise, would it be possible to provide/point to the command you use to do it? I imagine it's fairly straightforward, but in case there a some special considerations to obtain the same format as the ones you publish, I prefered asking.

cheers

[ctb]

we're working on it! The only really trick part is naming the sketches. @bluegenes or maybe @ccbaumler could probably point you at the right code more easily than me; otherwise I'll track it down when I have time :)

[ccbaumler]

There have been quite a few developments with sourmash's database scripts recently.

@bluegenes and I will be meeting Wednesday to discuss where we stand currently with database creation/updating. I'll add this to my notes.

Should be able to create the updated release GTDB rather quickly all things considered. Check back in with this issue in a week's time if you don't hear anything.

[ccbaumler]

Update! We have a bug that we are working through. #3191