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Pinned

  1. Quickly search, compare, and analyze genomic and metagenomic data sets.

    Python 324 65

  2. Indexing & querying large assembly graphs -- in space, no one can hear you miao!

    Standard ML 102 14

  3. Remove contaminated contigs from genomes using k-mers and taxonomies.

    Python 31 1

  4. map Illumina metagenomes to genomes!

    Jupyter Notebook 27 6

Contribution activity

October 2022

Created a pull request in sourmash-bio/sra_search that received 1 comment

[WIP] exit when no compatible signatures are available

should fix #4 but I can't reproduce 😅

+5 −0 1 comment
Opened 2 other pull requests in 2 repositories
ctb/magsearch 1 merged
sourmash-bio/sra_search 1 merged

Created an issue in sourmash-bio/sourmash that received 1 comment

consider importing rust code improvements from sra_search?

in sourmash-bio/sra_search#12, @luizirber defines some functions that seem to me like they would be nice to have in sourmash core - fn check_compa…

1 comment
Opened 2 other issues in 2 repositories
sourmash-bio/sourmash 1 open
ctb/magsearch 1 open
1 contribution in private repositories Oct 3

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