Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

[EXP] use codon degeneracy to properly translate edge amino acids if possible #1579

Open
wants to merge 1 commit into
base: latest
Choose a base branch
from

Conversation

bluegenes
Copy link
Contributor

Addresses #659

This functionality already existed in translate_codon, here I modified the to_aa function to allow 2-length codons to be passed into translate_codon.

@codecov
Copy link

codecov bot commented Jun 10, 2021

Codecov Report

Merging #1579 (d85cbfc) into latest (6b5806c) will increase coverage by 8.18%.
The diff coverage is n/a.

Impacted file tree graph

@@            Coverage Diff             @@
##           latest    #1579      +/-   ##
==========================================
+ Coverage   81.10%   89.28%   +8.18%     
==========================================
  Files         102       75      -27     
  Lines       10334     6626    -3708     
  Branches     1171     1171              
==========================================
- Hits         8381     5916    -2465     
+ Misses       1748      505    -1243     
  Partials      205      205              
Flag Coverage Δ
python 89.28% <ø> (ø)
rust ?

Flags with carried forward coverage won't be shown. Click here to find out more.

Impacted Files Coverage Δ
src/core/src/ffi/utils.rs
src/core/src/ffi/nodegraph.rs
src/core/src/lib.rs
src/core/src/signature.rs
src/core/src/ffi/minhash.rs
src/core/tests/minhash.rs
src/core/src/cmd.rs
src/core/src/index/sbt/mhbt.rs
src/core/src/wasm.rs
src/core/src/ffi/signature.rs
... and 16 more

Continue to review full report at Codecov.

Legend - Click here to learn more
Δ = absolute <relative> (impact), ø = not affected, ? = missing data
Powered by Codecov. Last update 6b5806c...d85cbfc. Read the comment docs.

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

Successfully merging this pull request may close these issues.

None yet

1 participant