Record manifest providing package in history, use specific warning for _check_extensions

[braingram]

Description

This PR adds the package name and version for the package providing the manifest used to create an extension that was used to write the file. For example, writing out a file with this PR produces a history:

history:
  extensions:
  - !core/extension_metadata-1.0.0
    extension_class: asdf.extension._manifest.ManifestExtension
    extension_uri: asdf://asdf-format.org/core/extensions/core-1.5.0
    manifest_software: !core/software-1.0.0 {name: asdf-standard, version: 1.0.4.dev153+gcafd84a}
    software: !core/software-1.0.0 {name: asdf, version: 3.0.2.dev81+g67e7a8e3.d20240205}

This will be beneficial for tracking what software was used for the many asdf extensions that use manifests from other packages (like gwcs and asdf-wcs-schemas, roman_datamodels and rad, etc...).

This new manifest_software is also checked during AsdfFile._check_extension.

Finally, the warning class used during _check_extension was changed from the generic AsdfWarning to a more specific AsdfPackageVersionWarning (which inherits from AsdfWarning).

Fixes #1740

Checklist:

• pre-commit checks ran successfully
• tests ran successfully
• for a public change, a changelog entry was added
• for a public change, documentation was updated
• for any new features, unit tests were added