Merge pull request #596 from bourque/v0.23.0

Release v0.23

.pep8speaks.yml

@@ -17,6 +17,7 @@ scanner:
 pycodestyle:
     max-line-length: 100  # Default is 79 in PEP8
     ignore:  # Errors and warnings to ignore
+        - E501  # Line too long
         - E505
 
 only_mention_files_with_errors: True  # If False, a separate status comment for each file is made.

.pyup.yml

@@ -18,7 +18,7 @@ branch: develop
 # update schedule
 # default: empty
 # allowed: "every day", "every week", ..
-schedule: "every week"
+schedule: "every month"
 
 # search for requirement files
 # default: True

CHANGES.rst

@@ -1,3 +1,46 @@
+0.23.0 (2020-07-01)
+===================
+
+New Features
+------------
+
+Project & API Documentation
+~~~~~~~~~~~~~~~~~~~~~~~~~~~
+
+- The ``jwql_web_app`` PowerPoint presentation has been updated
+- The bokeh templating software now has full API documentation
+- Updated ``README`` and About webpage to reflect changes to development team members
+
+Web Application
+~~~~~~~~~~~~~~~
+
+- Added webpage to view FITS headers of each extension for a given dataset
+- Added webpage for displaying Dark Monitor results with ``bokeh`` plots
+- Added webpage for viewing contents of a given JWQL database table
+- Added webpage for querying and displaying anomaly results
+- Added slider bar for easily navigating through integrations in preview image display
+- The list of anomalies one can flag in a preview image is now instrument specific
+
+
+``jwql`` Repository
+~~~~~~~~~~~~~~~~~~~
+
+- The ``jwql-3.6`` conda environment now uses the ``astroconda`` channel instead of ``astroconda-dev``
+- Added Bias Monitor module, which currently monitors the bias levels for NIRCam
+- Added Readnoise Monitor module, which monitors readnoise for all instruments except FGS
+- Added Bad Pixel Monitor module, which tracks bad pixels for all instruments
+- Cron job logs now include a print out of the complete ``conda`` environment being used
+
+
+Bug Fixes
+---------
+
+Project & API Documentation
+~~~~~~~~~~~~~~~~~~~~~~~~~~~
+
+- Fixed broken link to ``numpydoc`` docstring convention in Style Guide
+
+
 0.22.0 (2019-08-26)
 ===================
 

Jenkinsfile

@@ -27,7 +27,7 @@ if (utils.scm_checkout()) return
 
 // Establish OS and Python version variables for the matrix
 matrix_os = ["linux-stable"] // (Note that Jenkins can only be run with Linux, not MacOSX/Windows)
-matrix_python = ["3.5", "3.6"]
+matrix_python = ["3.6"]
 
 // Set up the matrix of builds
 matrix = []

README.md

@@ -80,7 +80,7 @@ Next, activate the `base` or `root` environment (depending on your version of `c
 source activate base/root
 ```
 
-Lastly, create the `jwql` environment with either Python 3.5 or 3.6, via the `environment_python_3_5.yml` or `environment_python_3_6.yml` file, respectively. We recommend installing with the 3.6 version:
+Lastly, create the `jwql` environment via the `environment_python_3_6.yml` file:
 
 ```
 conda env create -f environment_python_3_6.yml --name jwql-3.6
@@ -94,7 +94,7 @@ Next, you need to install the `jwql` package under development mode.  This can b
 python setup.py develop
 ```
 
-or 
+or
 
 ```
 pip install -e .
@@ -145,14 +145,22 @@ Any questions about the `jwql` project or its software can be directed to `jwql@
 
 ## Current Development Team
 - Matthew Bourque (INS) [@bourque](https://github.com/bourque)
-- Lauren Chambers (INS) [@laurenmarietta](https://github.com/laurenmarietta)
 - Misty Cracraft (INS) [@cracraft](https://github.com/cracraft)
-- Joe Filippazzo (INS) [@hover2pi](https://github.com/hover2pi)
+- Mike Engesser (INS) [@mengesser](https://github.com/mengesser)
+- Mees Fix (INS) [@mfixstsci](https://github.com/mfixstsci)
 - Bryan Hilbert (INS) [@bilhbert4](https://github.com/bhilbert4)
 - Graham Kanarek (INS) [@gkanarek](https://github.com/gkanarek)
+- Teagan King (INS) [@tnking97](https://github.com/tnking97)
+- Maria Pena-Guerrero [@penaguerrero](https://github.com/penaguerrero)
+- Ben Sunnquist (INS) [@bsunnquist](https://github.com/bsunnquist)
+
+## Past Development Team Members
+- Lauren Chambers (INS) [@laurenmarietta](https://github.com/laurenmarietta)
+- Joe Filippazzo (INS) [@hover2pi](https://github.com/hover2pi)
+- Sara Ogaz (DMD) [@SaOgaz](https://github.com/SaOgaz)
 - Catherine Martlin (INS) [@catherine-martlin](https://github.com/catherine-martlin)
 - Johannes Sahlmann (INS) [@Johannes-Sahlmann](https://github.com/johannes-sahlmann)
-- Ben Sunnquist (INS) [@bsunnquist](https://github.com/bsunnquist)
+
 
 ## Acknowledgments:
 - Faith Abney (DMD)
@@ -194,7 +202,6 @@ Any questions about the `jwql` project or its software can be directed to `jwql@
 - Prem Mishra (ITSD)
 - Don Mueller (ITSD)
 - Maria Antonia Nieto-Santisteban (SEITO)
-- Sara Ogaz (DMD) [@SaOgaz](https://github.com/SaOgaz)
 - Brian O'Sullivan (INS)
 - Joe Pollizzi (JWSTMO)
 - Lee Quick (DMD)

environment_python_3_6.yml

@@ -1,37 +1,40 @@
 channels:
 - defaults
-- http://ssb.stsci.edu/astroconda-dev
+- http://ssb.stsci.edu/astroconda
 dependencies:
-- astroquery=0.3.9
-- bokeh=1.3.4
-- django=2.2.1
-- flake8=3.7.7
+- astroquery=0.3.10
+- bokeh>=1.0,<1.4
+- django=2.2.5
+- flake8=3.7.9
 - inflection=0.3.1
-- ipython=7.7.0
-- jinja2=2.10
-- jsonschema=2.6.0
-- jwst=0.13.0
+- ipython=7.13.0
+- jinja2=2.10.3
+- jsonschema=3.2.0
 - matplotlib=3.1.0
+- nodejs=10.13.0
 - numpy=1.16.4
-- numpydoc=0.9.0
-- pandas=0.24.2
+- numpydoc=0.9.2
+- pandas=1.0.3
 - pip=19.1.1
 - postgresql=9.6.6
 - psycopg2=2.7.5
+- pysiaf==0.7.1
 - python=3.6.4
-- pytest=5.0.1
-- pytest-cov=2.7.1
+- pytest=5.4.2
+- pytest-cov=2.8.1
 - scipy=1.3.0
 - setuptools=41.0.1
-- sphinx=2.1.2
-- sqlalchemy=1.3.7
-- stsci_rtd_theme=0.0.2
-- twine=1.13.0
+- sphinx=3.0.3
+- sqlalchemy=1.3.17
+- twine=2.0.0
 - pip:
-  - asdf==2.3.3
-  - astropy==3.2.1
-  - authlib==0.11
-  - codecov==2.0.15
+  - asdf==2.6.0
+  - astropy==4.0.1
+  - authlib==0.14.3
+  - codecov==2.1.3
+  - crds==7.5.0.0
   - jwedb>=0.0.3
-  - pysiaf==0.4.0
   - pysqlite3==0.2.2
+  - stsci_rtd_theme==0.0.2
+  - git+https://github.com/spacetelescope/jwst@0.16.2
+  - git+https://github.com/spacetelescope/jwst_reffiles