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moves IntensityTable import
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neuromusic committed Apr 30, 2021
1 parent f4f7b1f commit 510241c
Showing 1 changed file with 1 addition and 3 deletions.
4 changes: 1 addition & 3 deletions examples/pipelines/dartfish_pipeline.py
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# threshold at which we will attempt to decode the pixel vector.

import seaborn as sns
from starfish import IntensityTable


def compute_magnitudes(stack, norm_order=2):
Expand Down Expand Up @@ -245,9 +246,6 @@ def compute_magnitudes(stack, norm_order=2):
sns.despine(offset=2)
plt.title('Set minimum distance threshold')


from starfish import IntensityTable

distance_threshold = min_dist

psd = DetectPixels.PixelSpotDecoder(
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