iq-tree: add new version delete duplicate package (#44043)

* iq-tree: add new version delete duplicate package * Replace iqtree2 dependency orthofinder: replace iqtree2 with iq-tree@2 py-phylophlan: replace iqtree2 with iq-tree@2
spack · May 8, 2024 · b4411cf · b4411cf
1 parent 65d1ae0
commit b4411cf
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Showing 4 changed files with 5 additions and 45 deletions.
diff --git a/var/spack/repos/builtin/packages/iq-tree/package.py b/var/spack/repos/builtin/packages/iq-tree/package.py
@@ -16,6 +16,9 @@ class IqTree(CMakePackage):
 
     license("GPL-2.0-or-later")
 
+    version(
+        "2.3.2", tag="v2.3.1", commit="60f1aa68646ab84cc96b55a7548707adde15f47a", submodules=True
+    )
     version(
         "2.3.1", tag="v2.3.1", commit="2914a2f7aac0a1a3c4fadde42c83e5dee315186d", submodules=True
     )

diff --git a/var/spack/repos/builtin/packages/iqtree2/package.py b/var/spack/repos/builtin/packages/iqtree2/package.py
diff --git a/var/spack/repos/builtin/packages/orthofinder/package.py b/var/spack/repos/builtin/packages/orthofinder/package.py
@@ -54,7 +54,7 @@ class Orthofinder(Package):
     depends_on("blast-plus", type="run", when="+blast")
     depends_on("mmseqs2", type="run", when="+mmseqs2")
     depends_on("muscle5", type="run", when="+muscle")
-    depends_on("iqtree2", type="run", when="+iqtree")
+    depends_on("iq-tree@2", type="run", when="+iqtree")
     depends_on("raxml", type="run", when="+raxml")
     depends_on("raxml-ng", type="run", when="+raxml-ng")
 

diff --git a/var/spack/repos/builtin/packages/py-phylophlan/package.py b/var/spack/repos/builtin/packages/py-phylophlan/package.py
@@ -34,5 +34,5 @@ class PyPhylophlan(PythonPackage):
     depends_on("mafft@7.310:", type=("build", "run"))
     depends_on("fasttree@2.1.8:", type=("build", "run"))
     depends_on("raxml@8.2.10:", type=("build", "run"))
-    depends_on("iqtree2", type=("build", "run"))
+    depends_on("iq-tree@2", type=("build", "run"))
     depends_on("mash", type=("build", "run"))