Installation issue with ruby 2.6.0-rc1 #1833

PikachuEXE · 2018-12-10T01:36:23Z

If you're having trouble installing Nokogiri ...

Have you tried following the installation tutorial?
Yes, succeeded with "install with system libraries" only.
But unable to "Install with included libraries"

What is the output of gem install?

gem install nokogiri
Building native extensions. This could take a while...
ERROR:  Error installing nokogiri:
	ERROR: Failed to build gem native extension.

    current directory: /users/pikachuexe/.rvm/gems/ruby-2.6.0-rc1/gems/nokogiri-1.8.5/ext/nokogiri
/users/pikachuexe/.rvm/rubies/ruby-2.6.0-rc1/bin/ruby -I /users/pikachuexe/.rvm/rubies/ruby-2.6.0-rc1/lib/ruby/2.6.0 -r ./siteconf20181210-83935-1bqidfa.rb extconf.rb
checking if the C compiler accepts ... yes
checking if the C compiler accepts -Wno-error=unused-command-line-argument-hard-error-in-future... no
Building nokogiri using packaged libraries.
Using mini_portile version 2.3.0
checking for iconv.h... yes
checking for gzdopen() in -lz... yes
sh: CC_WRAPPER: command not found
checking for iconv using --with-opt-* flags... yes
************************************************************************
IMPORTANT NOTICE:

Building Nokogiri with a packaged version of libxml2-2.9.8
with the following patches applied:
	- 0001-Revert-Do-not-URI-escape-in-server-side-includes.patch
	- 0002-Fix-nullptr-deref-with-XPath-logic-ops.patch
	- 0003-Fix-infinite-loop-in-LZMA-decompression.patch

Team Nokogiri will keep on doing their best to provide security
updates in a timely manner, but if this is a concern for you and want
to use the system library instead; abort this installation process and
reinstall nokogiri as follows:

    gem install nokogiri -- --use-system-libraries
        [--with-xml2-config=/path/to/xml2-config]
        [--with-xslt-config=/path/to/xslt-config]

If you are using Bundler, tell it to use the option:

    bundle config build.nokogiri --use-system-libraries
    bundle install

Note, however, that nokogiri is not fully compatible with arbitrary
versions of libxml2 provided by OS/package vendors.
************************************************************************
Extracting libxml2-2.9.8.tar.gz into tmp/x86_64-apple-darwin17.7.0/ports/libxml2/2.9.8... OK
Running git apply with /users/pikachuexe/.rvm/gems/ruby-2.6.0-rc1/gems/nokogiri-1.8.5/patches/libxml2/0001-Revert-Do-not-URI-escape-in-server-side-includes.patch... OK
Running git apply with /users/pikachuexe/.rvm/gems/ruby-2.6.0-rc1/gems/nokogiri-1.8.5/patches/libxml2/0002-Fix-nullptr-deref-with-XPath-logic-ops.patch... OK
Running git apply with /users/pikachuexe/.rvm/gems/ruby-2.6.0-rc1/gems/nokogiri-1.8.5/patches/libxml2/0003-Fix-infinite-loop-in-LZMA-decompression.patch... OK
Running 'configure' for libxml2 2.9.8... ERROR, review '/users/pikachuexe/.rvm/gems/ruby-2.6.0-rc1/gems/nokogiri-1.8.5/ext/nokogiri/tmp/x86_64-apple-darwin17.7.0/ports/libxml2/2.9.8/configure.log' to see what happened. Last lines are:
========================================================================
checking whether to enable maintainer-specific portions of Makefiles... yes
checking build system type... x86_64-apple-darwin17.7.0
checking host system type... x86_64-apple-darwin17.7.0
checking for a BSD-compatible install... /usr/local/bin/ginstall -c
checking whether build environment is sane... yes
checking for x86_64-apple-darwin17.7.0-strip... no
checking for strip... strip
checking for a thread-safe mkdir -p... /usr/local/bin/gmkdir -p
checking for gawk... gawk
checking whether make sets $(MAKE)... yes
checking whether make supports nested variables... yes
checking whether make supports nested variables... (cached) yes
checking for x86_64-apple-darwin17.7.0-gcc... $(CC_WRAPPER) gcc
checking whether the C compiler works... no
configure: error: in `/users/pikachuexe/.rvm/gems/ruby-2.6.0-rc1/gems/nokogiri-1.8.5/ext/nokogiri/tmp/x86_64-apple-darwin17.7.0/ports/libxml2/2.9.8/libxml2-2.9.8':
configure: error: C compiler cannot create executables
See `config.log' for more details
========================================================================
*** extconf.rb failed ***
Could not create Makefile due to some reason, probably lack of necessary
libraries and/or headers.  Check the mkmf.log file for more details.  You may
need configuration options.

Provided configuration options:
	--with-opt-dir
	--with-opt-include
	--without-opt-include=${opt-dir}/include
	--with-opt-lib
	--without-opt-lib=${opt-dir}/lib
	--with-make-prog
	--without-make-prog
	--srcdir=.
	--curdir
	--ruby=/users/pikachuexe/.rvm/rubies/ruby-2.6.0-rc1/bin/$(RUBY_BASE_NAME)
	--help
	--clean
	--use-system-libraries
	--enable-static
	--disable-static
	--with-zlib-dir
	--without-zlib-dir
	--with-zlib-include
	--without-zlib-include=${zlib-dir}/include
	--with-zlib-lib
	--without-zlib-lib=${zlib-dir}/lib
	--enable-cross-build
	--disable-cross-build
/users/pikachuexe/.rvm/gems/ruby-2.6.0-rc1/gems/mini_portile2-2.3.0/lib/mini_portile2/mini_portile.rb:402:in `block in execute': Failed to complete configure task (RuntimeError)
	from /users/pikachuexe/.rvm/gems/ruby-2.6.0-rc1/gems/mini_portile2-2.3.0/lib/mini_portile2/mini_portile.rb:373:in `chdir'
	from /users/pikachuexe/.rvm/gems/ruby-2.6.0-rc1/gems/mini_portile2-2.3.0/lib/mini_portile2/mini_portile.rb:373:in `execute'
	from /users/pikachuexe/.rvm/gems/ruby-2.6.0-rc1/gems/mini_portile2-2.3.0/lib/mini_portile2/mini_portile.rb:110:in `configure'
	from /users/pikachuexe/.rvm/gems/ruby-2.6.0-rc1/gems/mini_portile2-2.3.0/lib/mini_portile2/mini_portile.rb:153:in `cook'
	from extconf.rb:365:in `block (2 levels) in process_recipe'
	from extconf.rb:257:in `block in chdir_for_build'
	from extconf.rb:256:in `chdir'
	from extconf.rb:256:in `chdir_for_build'
	from extconf.rb:364:in `block in process_recipe'
	from extconf.rb:262:in `tap'
	from extconf.rb:262:in `process_recipe'
	from extconf.rb:551:in `<main>'

To see why this extension failed to compile, please check the mkmf.log which can be found here:

  /users/pikachuexe/.rvm/gems/ruby-2.6.0-rc1/extensions/x86_64-darwin-17/2.6.0/nokogiri-1.8.5/mkmf.log

extconf failed, exit code 1

Gem files will remain installed in /users/pikachuexe/.rvm/gems/ruby-2.6.0-rc1/gems/nokogiri-1.8.5 for inspection.
Results logged to /users/pikachuexe/.rvm/gems/ruby-2.6.0-rc1/extensions/x86_64-darwin-17/2.6.0/nokogiri-1.8.5/gem_make.out

What are the contents of the mkmf.log file?

" gcc -o conftest -I/users/pikachuexe/.rvm/rubies/ruby-2.6.0-rc1/include/ruby-2.6.0/x86_64-darwin17 -I/users/pikachuexe/.rvm/rubies/ruby-2.6.0-rc1/include/ruby-2.6.0/ruby/backward -I/users/pikachuexe/.rvm/rubies/ruby-2.6.0-rc1/include/ruby-2.6.0 -I.  -I/usr/local/opt/libyaml/include -I/usr/local/opt/readline/include -I/usr/local/opt/libksba/include -I/usr/local/opt/openssl@1.1/include -D_XOPEN_SOURCE -D_DARWIN_C_SOURCE -D_DARWIN_UNLIMITED_SELECT -D_REENTRANT   -O3 -ggdb3 -Wall -Wextra -Wdeclaration-after-statement -Wdeprecated-declarations -Wdivision-by-zero -Wimplicit-function-declaration -Wimplicit-int -Wpointer-arith -Wshorten-64-to-32 -Wwrite-strings -Wmissing-noreturn -Wno-constant-logical-operand -Wno-long-long -Wno-missing-field-initializers -Wno-overlength-strings -Wno-parentheses-equality -Wno-self-assign -Wno-tautological-compare -Wno-unused-parameter -Wno-unused-value -Wunused-variable -Wextra-tokens  -fno-common -pipe  conftest.c  -L. -L/users/pikachuexe/.rvm/rubies/ruby-2.6.0-rc1/lib -L/usr/local/opt/libyaml/lib -L/usr/local/opt/readline/lib -L/usr/local/opt/libksba/lib -L/usr/local/opt/openssl@1.1/lib -L. -fstack-protector-strong -L/usr/local/lib -L/usr/local/opt/libyaml/lib -L/usr/local/opt/readline/lib -L/usr/local/opt/libksba/lib -L/usr/local/opt/openssl@1.1/lib     -lruby.2.6    "
checked program was:
/* begin */
1: #include "ruby.h"
2:
3: int main(int argc, char **argv)
4: {
5:   return 0;
6: }
/* end */

" gcc -I/users/pikachuexe/.rvm/rubies/ruby-2.6.0-rc1/include/ruby-2.6.0/x86_64-darwin17 -I/users/pikachuexe/.rvm/rubies/ruby-2.6.0-rc1/include/ruby-2.6.0/ruby/backward -I/users/pikachuexe/.rvm/rubies/ruby-2.6.0-rc1/include/ruby-2.6.0 -I.  -I/usr/local/opt/libyaml/include -I/usr/local/opt/readline/include -I/usr/local/opt/libksba/include -I/usr/local/opt/openssl@1.1/include -D_XOPEN_SOURCE -D_DARWIN_C_SOURCE -D_DARWIN_UNLIMITED_SELECT -D_REENTRANT   -O3 -ggdb3 -Wall -Wextra -Wdeclaration-after-statement -Wdeprecated-declarations -Wdivision-by-zero -Wimplicit-function-declaration -Wimplicit-int -Wpointer-arith -Wshorten-64-to-32 -Wwrite-strings -Wmissing-noreturn -Wno-constant-logical-operand -Wno-long-long -Wno-missing-field-initializers -Wno-overlength-strings -Wno-parentheses-equality -Wno-self-assign -Wno-tautological-compare -Wno-unused-parameter -Wno-unused-value -Wunused-variable -Wextra-tokens  -fno-common -pipe    -Werror -c conftest.c"
checked program was:
/* begin */
1: #include "ruby.h"
2:
3: int main() {return 0;}
/* end */

" gcc -I/users/pikachuexe/.rvm/rubies/ruby-2.6.0-rc1/include/ruby-2.6.0/x86_64-darwin17 -I/users/pikachuexe/.rvm/rubies/ruby-2.6.0-rc1/include/ruby-2.6.0/ruby/backward -I/users/pikachuexe/.rvm/rubies/ruby-2.6.0-rc1/include/ruby-2.6.0 -I.  -I/usr/local/opt/libyaml/include -I/usr/local/opt/readline/include -I/usr/local/opt/libksba/include -I/usr/local/opt/openssl@1.1/include -D_XOPEN_SOURCE -D_DARWIN_C_SOURCE -D_DARWIN_UNLIMITED_SELECT -D_REENTRANT   -O3 -ggdb3 -Wall -Wextra -Wdeclaration-after-statement -Wdeprecated-declarations -Wdivision-by-zero -Wimplicit-function-declaration -Wimplicit-int -Wpointer-arith -Wshorten-64-to-32 -Wwrite-strings -Wmissing-noreturn -Wno-constant-logical-operand -Wno-long-long -Wno-missing-field-initializers -Wno-overlength-strings -Wno-parentheses-equality -Wno-self-assign -Wno-tautological-compare -Wno-unused-parameter -Wno-unused-value -Wunused-variable -Wextra-tokens  -fno-common -pipe  -Wno-error=unused-command-line-argument-hard-error-in-future   -Werror -c conftest.c"
error: unknown warning option '-Werror=unused-command-line-argument-hard-error-in-future'; did you mean '-Werror=unused-command-line-argument'? [-Werror,-Wunknown-warning-option]
checked program was:
/* begin */
1: #include "ruby.h"
2:
3: int main() {return 0;}
/* end */

have_header: checking for iconv.h... -------------------- yes

" gcc -E -I/users/pikachuexe/.rvm/rubies/ruby-2.6.0-rc1/include/ruby-2.6.0/x86_64-darwin17 -I/users/pikachuexe/.rvm/rubies/ruby-2.6.0-rc1/include/ruby-2.6.0/ruby/backward -I/users/pikachuexe/.rvm/rubies/ruby-2.6.0-rc1/include/ruby-2.6.0 -I.  -I/usr/local/opt/libyaml/include -I/usr/local/opt/readline/include -I/usr/local/opt/libksba/include -I/usr/local/opt/openssl@1.1/include -D_XOPEN_SOURCE -D_DARWIN_C_SOURCE -D_DARWIN_UNLIMITED_SELECT -D_REENTRANT   -O3 -ggdb3 -Wall -Wextra -Wdeclaration-after-statement -Wdeprecated-declarations -Wdivision-by-zero -Wimplicit-function-declaration -Wimplicit-int -Wpointer-arith -Wshorten-64-to-32 -Wwrite-strings -Wmissing-noreturn -Wno-constant-logical-operand -Wno-long-long -Wno-missing-field-initializers -Wno-overlength-strings -Wno-parentheses-equality -Wno-self-assign -Wno-tautological-compare -Wno-unused-parameter -Wno-unused-value -Wunused-variable -Wextra-tokens  -fno-common -pipe  -O3 -Wall -Wcast-qual -Wwrite-strings -Wmissing-noreturn -Winline  conftest.c -o conftest.i"
checked program was:
/* begin */
1: #include "ruby.h"
2:
3: #include <iconv.h>
/* end */

--------------------

have_library: checking for gzdopen() in -lz... -------------------- yes

" gcc -o conftest -I/users/pikachuexe/.rvm/rubies/ruby-2.6.0-rc1/include/ruby-2.6.0/x86_64-darwin17 -I/users/pikachuexe/.rvm/rubies/ruby-2.6.0-rc1/include/ruby-2.6.0/ruby/backward -I/users/pikachuexe/.rvm/rubies/ruby-2.6.0-rc1/include/ruby-2.6.0 -I.  -I/usr/local/opt/libyaml/include -I/usr/local/opt/readline/include -I/usr/local/opt/libksba/include -I/usr/local/opt/openssl@1.1/include -D_XOPEN_SOURCE -D_DARWIN_C_SOURCE -D_DARWIN_UNLIMITED_SELECT -D_REENTRANT   -O3 -ggdb3 -Wall -Wextra -Wdeclaration-after-statement -Wdeprecated-declarations -Wdivision-by-zero -Wimplicit-function-declaration -Wimplicit-int -Wpointer-arith -Wshorten-64-to-32 -Wwrite-strings -Wmissing-noreturn -Wno-constant-logical-operand -Wno-long-long -Wno-missing-field-initializers -Wno-overlength-strings -Wno-parentheses-equality -Wno-self-assign -Wno-tautological-compare -Wno-unused-parameter -Wno-unused-value -Wunused-variable -Wextra-tokens  -fno-common -pipe  -O3 -Wall -Wcast-qual -Wwrite-strings -Wmissing-noreturn -Winline conftest.c  -L. -L/users/pikachuexe/.rvm/rubies/ruby-2.6.0-rc1/lib -L/usr/local/opt/libyaml/lib -L/usr/local/opt/readline/lib -L/usr/local/opt/libksba/lib -L/usr/local/opt/openssl@1.1/lib -L. -fstack-protector-strong -L/usr/local/lib -L/usr/local/opt/libyaml/lib -L/usr/local/opt/readline/lib -L/usr/local/opt/libksba/lib -L/usr/local/opt/openssl@1.1/lib     -lruby.2.6 -lz    "
checked program was:
/* begin */
 1: #include "ruby.h"
 2:
 3: #include <zlib.h>
 4:
 5: /*top*/
 6: extern int t(void);
 7: int main(int argc, char **argv)
 8: {
 9:   if (argc > 1000000) {
10:     int (* volatile tp)(void)=(int (*)(void))&t;
11:     printf("%d", (*tp)());
12:   }
13:
14:   return 0;
15: }
16: int t(void) { void ((*volatile p)()); p = (void ((*)()))gzdopen; return !p; }
/* end */

--------------------

have_iconv?: checking for iconv using --with-opt-* flags... -------------------- yes

" gcc -o conftest -I/users/pikachuexe/.rvm/rubies/ruby-2.6.0-rc1/include/ruby-2.6.0/x86_64-darwin17 -I/users/pikachuexe/.rvm/rubies/ruby-2.6.0-rc1/include/ruby-2.6.0/ruby/backward -I/users/pikachuexe/.rvm/rubies/ruby-2.6.0-rc1/include/ruby-2.6.0 -I.  -I/usr/local/opt/libyaml/include -I/usr/local/opt/readline/include -I/usr/local/opt/libksba/include -I/usr/local/opt/openssl@1.1/include -D_XOPEN_SOURCE -D_DARWIN_C_SOURCE -D_DARWIN_UNLIMITED_SELECT -D_REENTRANT   -O3 -ggdb3 -Wall -Wextra -Wdeclaration-after-statement -Wdeprecated-declarations -Wdivision-by-zero -Wimplicit-function-declaration -Wimplicit-int -Wpointer-arith -Wshorten-64-to-32 -Wwrite-strings -Wmissing-noreturn -Wno-constant-logical-operand -Wno-long-long -Wno-missing-field-initializers -Wno-overlength-strings -Wno-parentheses-equality -Wno-self-assign -Wno-tautological-compare -Wno-unused-parameter -Wno-unused-value -Wunused-variable -Wextra-tokens  -fno-common -pipe  -O3 -Wall -Wcast-qual -Wwrite-strings -Wmissing-noreturn -Winline conftest.c  -L. -L/users/pikachuexe/.rvm/rubies/ruby-2.6.0-rc1/lib -L/usr/local/opt/libyaml/lib -L/usr/local/opt/readline/lib -L/usr/local/opt/libksba/lib -L/usr/local/opt/openssl@1.1/lib -L. -fstack-protector-strong -L/usr/local/lib -L/usr/local/opt/libyaml/lib -L/usr/local/opt/readline/lib -L/usr/local/opt/libksba/lib -L/usr/local/opt/openssl@1.1/lib     -lruby.2.6    "
Undefined symbols for architecture x86_64:
  "_iconv", referenced from:
      _main in conftest-30a6c9.o
  "_iconv_open", referenced from:
      _main in conftest-30a6c9.o
ld: symbol(s) not found for architecture x86_64
clang: error: linker command failed with exit code 1 (use -v to see invocation)
checked program was:
/* begin */
 1: #include "ruby.h"
 2:
 3: #include <stdlib.h>
 4: #include <iconv.h>
 5:
 6: int main(void)
 7: {
 8:     iconv_t cd = iconv_open("", "");
 9:     iconv(cd, NULL, NULL, NULL, NULL);
10:     return EXIT_SUCCESS;
11: }
/* end */

" gcc -o conftest -I/users/pikachuexe/.rvm/rubies/ruby-2.6.0-rc1/include/ruby-2.6.0/x86_64-darwin17 -I/users/pikachuexe/.rvm/rubies/ruby-2.6.0-rc1/include/ruby-2.6.0/ruby/backward -I/users/pikachuexe/.rvm/rubies/ruby-2.6.0-rc1/include/ruby-2.6.0 -I.  -I/usr/local/opt/libyaml/include -I/usr/local/opt/readline/include -I/usr/local/opt/libksba/include -I/usr/local/opt/openssl@1.1/include -D_XOPEN_SOURCE -D_DARWIN_C_SOURCE -D_DARWIN_UNLIMITED_SELECT -D_REENTRANT   -O3 -ggdb3 -Wall -Wextra -Wdeclaration-after-statement -Wdeprecated-declarations -Wdivision-by-zero -Wimplicit-function-declaration -Wimplicit-int -Wpointer-arith -Wshorten-64-to-32 -Wwrite-strings -Wmissing-noreturn -Wno-constant-logical-operand -Wno-long-long -Wno-missing-field-initializers -Wno-overlength-strings -Wno-parentheses-equality -Wno-self-assign -Wno-tautological-compare -Wno-unused-parameter -Wno-unused-value -Wunused-variable -Wextra-tokens  -fno-common -pipe  -O3 -Wall -Wcast-qual -Wwrite-strings -Wmissing-noreturn -Winline conftest.c  -L. -L/users/pikachuexe/.rvm/rubies/ruby-2.6.0-rc1/lib -L/usr/local/opt/libyaml/lib -L/usr/local/opt/readline/lib -L/usr/local/opt/libksba/lib -L/usr/local/opt/openssl@1.1/lib -L. -fstack-protector-strong -L/usr/local/lib -L/usr/local/opt/libyaml/lib -L/usr/local/opt/readline/lib -L/usr/local/opt/libksba/lib -L/usr/local/opt/openssl@1.1/lib     -lruby.2.6 -liconv   "
checked program was:
/* begin */
 1: #include "ruby.h"
 2:
 3: #include <stdlib.h>
 4: #include <iconv.h>
 5:
 6: int main(void)
 7: {
 8:     iconv_t cd = iconv_open("", "");
 9:     iconv(cd, NULL, NULL, NULL, NULL);
10:     return EXIT_SUCCESS;
11: }
/* end */

--------------------

What operating system are you using?
MacOS 10.13.6 (17G3025)
RVM master
ruby 2.6.0rc1 (2018-12-06 trunk 66253) [x86_64-darwin17]
gem -v => 3.0.0.beta3

The text was updated successfully, but these errors were encountered:

nobu · 2018-12-10T02:34:05Z

This issue should be fixed by #1820

PikachuEXE · 2018-12-10T04:29:44Z

Possible to verify it without having a new release?

flavorjones · 2018-12-10T05:08:37Z

I can cut an RC if you'd like. I'm waiting for libxml 2.9.9 to be released before I release nokogiri 1.9.0, but happy to build a release candidate. Let me kick it off now.

PikachuEXE · 2018-12-10T05:43:47Z

Thanks
Please let me know when it's built

flavorjones · 2018-12-10T06:12:59Z

v1.9.0.rc1 has been released. Please watch #1835 to track the final release.

And please let us know if this addresses your issue.

PikachuEXE · 2018-12-10T06:19:36Z

The RC version can be installed on ruby 2.6 rc1 without any issue
Thanks for making the release :)

gem install nokogiri -v '1.9.0.rc1'
Fetching nokogiri-1.9.0.rc1.gem
Fetching mini_portile2-2.4.0.gem
Successfully installed mini_portile2-2.4.0
Building native extensions. This could take a while...
Successfully installed nokogiri-1.9.0.rc1
Parsing documentation for mini_portile2-2.4.0
Installing ri documentation for mini_portile2-2.4.0
Parsing documentation for nokogiri-1.9.0.rc1
Installing ri documentation for nokogiri-1.9.0.rc1
Done installing documentation for mini_portile2, nokogiri after 19 seconds
2 gems installed

flavorjones · 2018-12-10T06:28:39Z

Woo! That's good news. Thanks for reporting and testing.

flavorjones added the state/will-close label Dec 10, 2018

PikachuEXE closed this as completed Dec 10, 2018

flavorjones removed the state/will-close label Feb 16, 2021

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Installation issue with ruby 2.6.0-rc1 #1833

Installation issue with ruby 2.6.0-rc1 #1833

PikachuEXE commented Dec 10, 2018

nobu commented Dec 10, 2018

PikachuEXE commented Dec 10, 2018

flavorjones commented Dec 10, 2018

PikachuEXE commented Dec 10, 2018

flavorjones commented Dec 10, 2018

PikachuEXE commented Dec 10, 2018

flavorjones commented Dec 10, 2018

Installation issue with ruby 2.6.0-rc1 #1833

Installation issue with ruby 2.6.0-rc1 #1833

Comments

PikachuEXE commented Dec 10, 2018

If you're having trouble installing Nokogiri ...

nobu commented Dec 10, 2018

PikachuEXE commented Dec 10, 2018

flavorjones commented Dec 10, 2018

PikachuEXE commented Dec 10, 2018

flavorjones commented Dec 10, 2018

PikachuEXE commented Dec 10, 2018

flavorjones commented Dec 10, 2018