ActiveStateAnalyser software package allows to measure statistics describing neuronal network state. It has clear interface, visible workflow and obtained results could be extracted for next statistical processing.
- Download and unzip the code folder
- Install Anaconda
- Open Anaconda
- Execute
cd PATH_TO_CODE
conda env create -f environment.yml- Open Anaconda
- Execute
cd PATH_TO_CODE
conda activate neuron_analysis
jupyter notebookAfter this steps, the joined Jupiter Notebook, containing separated notebooks, will be open:
- ActiveStateAnalyzer
- Distance analysis
- Statistics&Shuffling
- MultipleShuffling
- Dimensionality reduction
A detailed guide to these notebooks is here.