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[Bug]: Missing synonym record for basionym in COLDP export #3482

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dhobern opened this issue Jul 8, 2023 · 2 comments
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[Bug]: Missing synonym record for basionym in COLDP export #3482

dhobern opened this issue Jul 8, 2023 · 2 comments
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@dhobern
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dhobern commented Jul 8, 2023

Steps to reproduce the bug

1. Select Global Lepidoptera Index project
2. Create and download COLDP export for OTU Lepidoptera Linnaeus, 1758
3. In Name.csv, "Barsine rhodophila Walker, 1864" is correctly shown as the basionym for "Stigmatophora (Stigmatophora) rhodophila (Walker, 1864)", but there is no record in Synonym.csv between these two names (whereas other basionyms are shown as synonyms).

Screenshot

Here is the relevant set of rows from Name.csv in https://sfg.taxonworks.org/downloads/658:

ID basionymID scientificName authorship rank uninomial genus infragenericEpithet specificEpithet infraspecificEpithet referenceID publishedInPage publishedInYear original code status link remarks

60591 60591-1a9c61ff06d4beb2d224632db16c82f9 Stigmatophora (Stigmatophora) rhodophila (Walker, 1864) species Stigmatophora Stigmatophora rhodophila 1864 false ICZN http://purl.obolibrary.org/obo/NOMEN_0000224 40015.00|ORIGINAL GENUS UNDETERMINED|Valid name|Noctuoidea-Arctiidae-Lithosiinae-9A-010011|Q:\Noctuoidea\Arctiidae\Lithosiinae\Drawer 9A|FC-Noctuoidea-Arctiidae-Lithosiinae-9A-010011.jpg|BC-Noctuoidea-Arctiidae-Lithosiinae-9A-010011.jpg

60591-1a9c61ff06d4beb2d224632db16c82f9 60591-1a9c61ff06d4beb2d224632db16c82f9 Barsine rhodophila Walker, 1864 species Barsine rhodophila 1864 true ICZN 40015.00|ORIGINAL GENUS UNDETERMINED|Valid name|Noctuoidea-Arctiidae-Lithosiinae-9A-010011|Q:\Noctuoidea\Arctiidae\Lithosiinae\Drawer 9A|FC-Noctuoidea-Arctiidae-Lithosiinae-9A-010011.jpg|BC-Noctuoidea-Arctiidae-Lithosiinae-9A-010011.jpg

899507 899507 Stigmatophora rhodophila (Walker, 1864) Stigmatophora rhodophila false

The corresponding record in Taxon.csv is as follows:

ID parentID nameID namePhrase provisional accordingToID scrutinizer scrutinizerID scrutinizerDate referenceID extinct temporalRangeStart temporalRangeEnd environment link remarks

452785 792163 60591

The only record in Synonym.csv for taxon 452785 is:

taxonID nameID status remarks referenceID

452785 899507

It's unclear to me why "Stigmatophora rhodophila (Walker, 1864)" is shown as its own basionym, since this is just another combination based on Barsine rhodophila.

Expected behavior

I would have expected an extra record in Synonym.csv:

taxonID nameID status remarks referenceID

452785 60591-1a9c61ff06d4beb2d224632db16c82f9

Additional Screenshots

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Environment

Production

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Version

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Browser Used

Vivaldi 6.1.3035.111 (Stable channel) (64-bit)

@dhobern dhobern added the bug An existing function is broken. label Jul 8, 2023
@mjy
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mjy commented Aug 29, 2023

@dhobern @gdower was this touched by the latest minor release?

@gdower gdower self-assigned this Aug 29, 2023
@dhobern
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dhobern commented Aug 30, 2023

Just checked the latest download and it remains unfixed.

@mjy mjy closed this as completed in ae10694 Sep 5, 2023
mjy added a commit that referenced this issue Sep 5, 2023
…synonym

Add basionyms to synonym export (Fix #3482)
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