bugfixes, added custom similarity file option

CHANGES.txt

@@ -1 +1,2 @@
-v0.1.0, 6/25/2014 -- Initial release.
+v0.1.0, 6/25/2014 -- Initial release.
+v0.1.0, 7/8/14 -- Bug fixes. Added ability to specify custom similarity file for semantic clustering.

MANIFEST.in

@@ -1,25 +1,19 @@
 #documentation
 recursive-include docs/_build/html *.*
 
-#data used for clustering
-recursive-include vfclust/data *
+#package
+recursive-include vfclust *
 
-#phonetic representation
-include vfclust/t2p/t2p.c
-include vfclust/t2p/t2pin.tmp
-include vfclust/Makefile
-
-#example files
-include vfclust/example/EXAMPLE.*
-include vfclust/example/EXAMPLE_sem.*
+#omit some unnecessary files (results, compiled source, mac junk)
+recursive-exclude * *_vfclust_*
+exclude vfclust/t2p/t2p
+recursive-exclude * .DS_Store
 
 #Misc
 include CHANGES.txt
 include LICENSE.txt
 include README
 
-## Testing
-include vfclust/test/__init__.py
 
 ## When adding in the app:
 # include vfclust_app 

TODO.md

@@ -1,8 +1,8 @@
 # TO DO
 
+- fix up pypi package using tips from website
+- ask kyle about testing
+http://docs.python-guide.org/en/latest/writing/tests/
 
-### Look up uncommon words
- 1. load a word list based on current category
- 2. if the given word isn't on the list, look on the web (Webster's API)
- 3. if still nothing, it doesn't count as a word
-
+- with identical words, put an identifier in (-999 or something), then don't include that number when 
+doing measures like "mean similarity score"

docs/Makefile

@@ -85,17 +85,17 @@ qthelp:
 	@echo
 	@echo "Build finished; now you can run "qcollectiongenerator" with the" \
 	      ".qhcp project file in $(BUILDDIR)/qthelp, like this:"
-	@echo "# qcollectiongenerator $(BUILDDIR)/qthelp/vfclust.qhcp"
+	@echo "# qcollectiongenerator $(BUILDDIR)/qthelp/VFClust.qhcp"
 	@echo "To view the help file:"
-	@echo "# assistant -collectionFile $(BUILDDIR)/qthelp/vfclust.qhc"
+	@echo "# assistant -collectionFile $(BUILDDIR)/qthelp/VFClust.qhc"
 
 devhelp:
 	$(SPHINXBUILD) -b devhelp $(ALLSPHINXOPTS) $(BUILDDIR)/devhelp
 	@echo
 	@echo "Build finished."
 	@echo "To view the help file:"
-	@echo "# mkdir -p $$HOME/.local/share/devhelp/vfclust"
-	@echo "# ln -s $(BUILDDIR)/devhelp $$HOME/.local/share/devhelp/vfclust"
+	@echo "# mkdir -p $$HOME/.local/share/devhelp/VFClust"
+	@echo "# ln -s $(BUILDDIR)/devhelp $$HOME/.local/share/devhelp/VFClust"
 	@echo "# devhelp"
 
 epub: