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Faster execution and other minor improvements #2175

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merged 4 commits into from Feb 27, 2019
Merged

Faster execution and other minor improvements #2175

merged 4 commits into from Feb 27, 2019

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jcohenadad
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The main purpose of this PR was to use isct_antsApplyTransfo instead of SCT system call for warping each volume, resulting in faster execution. In a typical dataset, execution time goes from 4.5min to 2min. Fixes #2173. This change makes #602 less relevant, there we can consider that this PR Fixes #602.

Other improvements include:

TODO:

  • Add QC in batch_processing

@jcohenadad jcohenadad mentioned this pull request Feb 27, 2019
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@jcohenadad jcohenadad added enhancement category: improves performance/results of an existing feature sct_warp_template context: labels Feb 27, 2019
@jcohenadad jcohenadad added this to the v4.0.0 milestone Feb 27, 2019
@jcohenadad jcohenadad merged commit b6a4f25 into master Feb 27, 2019
@jcohenadad jcohenadad deleted the jca/2173-warp-template2 branch February 27, 2019 15:43
@jcohenadad jcohenadad mentioned this pull request Feb 27, 2019
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jcohenadad added a commit that referenced this pull request Dec 18, 2019
@jcohenadad
Faster execution and other minor improvements (#2175)
b6f7cd4 
* .gitignore: Added sct_testing_data

* sct_warp_template: Replaced SCT call with isct_antsApplyTransforms

For faster execution. Fixes #2173

* reports/qc: Now supporting sct_warp_template

* batch_processing.sh: Added QC for warp_template


Former-commit-id: b6a4f25
This was referenced Mar 10, 2021
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