.. toctree::
:maxdepth: 2
spirit.chain <spirit.chain>
spirit.configuration <spirit.configuration>
spirit.constants <spirit.constants>
spirit.geometry <spirit.geometry>
spirit.hamiltonian <spirit.hamiltonian>
spirit.htst <spirit.htst>
spirit.io <spirit.io>
spirit.log <spirit.log>
spirit.parameters <parameters>
spirit.quantities <spirit.quantities>
spirit.simulation <spirit.simulation>
spirit.state <spirit.state>
spirit.system <spirit.system>
spirit.transition <spirit.transition>