Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Weibull #432

Closed
Tracked by #421
spsanderson opened this issue Apr 24, 2024 · 0 comments
Closed
Tracked by #421

Weibull #432

spsanderson opened this issue Apr 24, 2024 · 0 comments
Assignees
Labels
enhancement New feature or request

Comments

@spsanderson
Copy link
Owner

spsanderson commented Apr 24, 2024

Function:

#' Calculate Akaike Information Criterion (AIC) for Weibull Distribution
#'
#' This function calculates the Akaike Information Criterion (AIC) for a Weibull 
#' distribution fitted to the provided data.
#'
#' @family Utility
#' @author Steven P. Sanderson II, MPH
#'
#' @description
#' This function estimates the shape and scale parameters of a Weibull distribution 
#' from the provided data using maximum likelihood estimation,
#' and then calculates the AIC value based on the fitted distribution.
#'
#' @param .x A numeric vector containing the data to be fitted to a Weibull distribution.
#'
#' @details
#' This function fits a Weibull distribution to the provided data using maximum 
#' likelihood estimation. It estimates the shape and scale parameters
#' of the Weibull distribution using maximum likelihood estimation. Then, it 
#' calculates the AIC value based on the fitted distribution.
#' 
#' Initial parameter estimates: The function uses the method of moments estimates 
#' as starting points for the shape and scale parameters of the Weibull 
#' distribution.
#' 
#' Optimization method: The function uses the optim function for optimization. 
#' You might explore different optimization methods within optim for potentially 
#' better performance.
#' 
#' Goodness-of-fit: While AIC is a useful metric for model comparison, it's recommended 
#' to also assess the goodness-of-fit of the chosen model using visualization 
#' and other statistical tests.
#'
#' @examples
#' # Example 1: Calculate AIC for a sample dataset
#' set.seed(123)
#' x <- rweibull(100, shape = 2, scale = 1)
#' util_weibull_aic(x)
#'
#' @return
#' The AIC value calculated based on the fitted Weibull distribution to the provided data.
#'
#' @name util_weibull_aic
#'
#' @export
#' @rdname util_weibull_aic
util_weibull_aic <- function(.x) {
  # Tidyeval
  x <- as.numeric(.x)
  
  # Negative log-likelihood function for Weibull distribution
  neg_log_lik_weibull <- function(par, data) {
    shape <- par[1]
    scale <- par[2]
    n <- length(data)
    -sum(dweibull(data, shape = shape, scale = scale, log = TRUE))
  }
  
  # Get initial parameter estimates: method of moments
  pe <- TidyDensity::util_weibull_param_estimate(x)$parameter_tbl
  
  # Fit Weibull distribution using optim
  fit_weibull <- optim(
    c(pe$shape, pe$scale), 
    neg_log_lik_weibull, 
    data = x
  )
  
  # Extract log-likelihood and number of parameters
  logLik_weibull <- -fit_weibull$value
  k_weibull <- 2 # Number of parameters for Weibull distribution (shape and scale)
  
  # Calculate AIC
  AIC_weibull <- 2 * k_weibull - 2 * logLik_weibull
  
  # Return AIC
  return(AIC_weibull)
}

Example:

> set.seed(123)
> x <- rweibull(100, shape = 2, scale = 1)
> util_weibull_aic(x)
[1] 119.1065
> fitdistrplus::fitdist(x, "weibull", start = list(shape = 2, scale = 1))$aic
[1] 119.1065
@spsanderson spsanderson self-assigned this Apr 25, 2024
@spsanderson spsanderson added the enhancement New feature or request label Apr 25, 2024
@spsanderson spsanderson added this to the TidyDensity 1.4.0 milestone Apr 25, 2024
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
enhancement New feature or request
Development

No branches or pull requests

1 participant