Don't raise on open transaction if we already started in one

An adjustment to the bug fix for 🎫`369` to accommodate for
env.py scripts that use an enclosing transaction distinct from the
one that the context provides, so that the check for "didn't commit
the transaction" doesn't trigger in this scenario.

Change-Id: I3c1fa614495b61532999a84b2af3773e4d33c30b
Fixes: #417

alembic/runtime/migration.py

@@ -308,6 +308,9 @@ def run_migrations(self, **kw):
 
         head_maintainer = HeadMaintainer(self, heads)
 
+        starting_in_transaction = not self.as_sql and \
+            self.connection.in_transaction()
+
         for step in self._migrations_fn(heads, self):
             with self.begin_transaction(_per_migration=True):
                 if self.as_sql and not head_maintainer.heads:
@@ -326,7 +329,8 @@ def run_migrations(self, **kw):
                 # just to run the operations on every version
                 head_maintainer.update_to_step(step)
 
-            if not self.as_sql and not self.impl.transactional_ddl and \
+            if not starting_in_transaction and not self.as_sql and \
+                    not self.impl.transactional_ddl and \
                     self.connection.in_transaction():
                 raise util.CommandError(
                     "Migration \"%s\" has left an uncommitted "

docs/build/changelog.rst

@@ -7,6 +7,15 @@ Changelog
     :version: 0.9.1
     :released:
 
+    .. change:: 417
+      :tags: bug, commands
+      :tickets: 417, 369
+
+      An adjustment to the bug fix for :ticket:`369` to accommodate for
+      env.py scripts that use an enclosing transaction distinct from the
+      one that the context provides, so that the check for "didn't commit
+      the transaction" doesn't trigger in this scenario.
+
 .. changelog::
     :version: 0.9.0
     :released: February 28, 2017

tests/test_script_consumption.py

@@ -8,7 +8,7 @@
 from alembic.script import ScriptDirectory, Script
 from alembic.testing.env import clear_staging_env, staging_env, \
     _sqlite_testing_config, write_script, _sqlite_file_db, \
-    three_rev_fixture, _no_sql_testing_config
+    three_rev_fixture, _no_sql_testing_config, env_file_fixture
 from alembic.testing import eq_, assert_raises_message
 from alembic.testing.fixtures import TestBase, capture_context_buffer
 from alembic.environment import EnvironmentContext
@@ -281,6 +281,35 @@ def test_noerr_rev_leaves_open_transaction_transactional_ddl(self):
                 transactional_ddl=True, transaction_per_migration=False):
             command.upgrade(self.cfg, c)
 
+    def test_noerr_transaction_opened_externally(self):
+        a, b, c = self._opened_transaction_fixture()
+
+        env_file_fixture("""
+from sqlalchemy import engine_from_config, pool
+
+def run_migrations_online():
+    connectable = engine_from_config(
+        config.get_section(config.config_ini_section),
+        prefix='sqlalchemy.',
+        poolclass=pool.NullPool)
+
+    with connectable.connect() as connection:
+        with connection.begin() as real_trans:
+            context.configure(
+                connection=connection,
+                transactional_ddl=False,
+                transaction_per_migration=False
+            )
+
+            with context.begin_transaction():
+                context.run_migrations()
+
+run_migrations_online()
+
+""")
+
+        command.stamp(self.cfg, c)
+
 
 class EncodingTest(TestBase):