Workshop on genomic data integration with a emphasis on integrating genetics, epigenetics, and trascriptional activity. Workshop will take a case study based approach looking at specific data sets from oysters and corals. The workshop will take place at the Friday Harbor Labs with remote participation option
Dates: February 21, 22
Aim - To develop manuscript(s), similar in fashion to FROGER 🐸 and develop genomic analysis pipeline to be used in future efforts. It is increasingly evident that we have to consider the combined molecular and physiological states to understand population responses to changing environmental condiditons.
Prior to the workshop, participants will engage in Discussions and Wiki to share information including promising pipelines and relevant datasets.
8:00 - Biological / Genomic Concepts and theories to test [Fernald Classroom]
9:00 - Testable Hypotheses
10:00 - Machine Learning Opportunities (Hypothesis generating)
11:00 - Break / Lunch
1:00 - Data Access and Analysis Protocols
1:30 - Breakout Groups
4:00 - Regroup, Report, Plan
6:00 - Dinner
8:00 - Identify analyses not picked up in Day 01, or newly discovered
9:00 - Discuss Perspective Paper
10:00 - Outline Oyster OA paper
11:00 - Break/Lunch
1:00 - Breakout Groups
3:00 - Touch Base
4:00 - Establish Robust Workflows
6:00 - Dinner
Participants (IRL)
- Yaamini Venkataraman - WHOI
- Shelly Trigg - GMGI
- Ariana Huffmyer - URI
- Jill Ashey - URI
- Katherine Silliman - SCDNR
- Shayle Matsuda - Shedd Aquarium
- Laura Spencer - NOAA
- Hollie Putnam - URI
- Steven Roberts - UW
- Javier A. Rodríguez- Casariego - FIU
Participants (Remote)
- Emma Strand - URI
- Lauren Zane - URI
- Danielle Becker - URI
- Zach Bengtsson - UW
- Kelsey Yetsko - FIU
- Cecile Cres - URI